miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
194 5' -63.1 AC_000007.1 + 17506 1.09 0.000117
Target:  5'- gGAACCCGCCGCCGCCGUCGCCGUCGCc -3'
miRNA:   3'- -CUUGGGCGGCGGCGGCAGCGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 24011 0.8 0.024712
Target:  5'- aGGACgUGUCGUCcCCGUCGCCGUCGCc -3'
miRNA:   3'- -CUUGgGCGGCGGcGGCAGCGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 14261 0.79 0.030189
Target:  5'- gGAACCCagcGCCGCCGCCacuggCGCCG-CGCu -3'
miRNA:   3'- -CUUGGG---CGGCGGCGGca---GCGGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 2225 0.76 0.045476
Target:  5'- --uCCUGCCGCCGCCGcCGCCuggcuuccuccugcuGUUGCu -3'
miRNA:   3'- cuuGGGCGGCGGCGGCaGCGG---------------CAGCG- -5'
194 5' -63.1 AC_000007.1 + 26793 0.75 0.06133
Target:  5'- ---gCCGCUGCCGCUGcCGCCGgUGCa -3'
miRNA:   3'- cuugGGCGGCGGCGGCaGCGGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 9473 0.75 0.06133
Target:  5'- --uCCCGgugCGCCGUCGUCGCCGcCGUg -3'
miRNA:   3'- cuuGGGCg--GCGGCGGCAGCGGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 17822 0.74 0.063077
Target:  5'- -cGCgCGCCGCCGCCGguggugCGCaCGaCGCa -3'
miRNA:   3'- cuUGgGCGGCGGCGGCa-----GCG-GCaGCG- -5'
194 5' -63.1 AC_000007.1 + 16309 0.74 0.074607
Target:  5'- cGGCCCGCaugGCCGcCCGUCGgCCGgUGCg -3'
miRNA:   3'- cUUGGGCGg--CGGC-GGCAGC-GGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 9541 0.73 0.083389
Target:  5'- cGGCCgCGCCGUCaCCGagaccaugCGCCGUCGCc -3'
miRNA:   3'- cUUGG-GCGGCGGcGGCa-------GCGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 18590 0.72 0.090615
Target:  5'- uAACCCGCCcuaGCCGCgCGUcccugCGCCGUgcCGCc -3'
miRNA:   3'- cUUGGGCGG---CGGCG-GCA-----GCGGCA--GCG- -5'
194 5' -63.1 AC_000007.1 + 18556 0.71 0.106885
Target:  5'- aAACCUguGCUGCCaggGCCGUcCGCCGUUGUu -3'
miRNA:   3'- cUUGGG--CGGCGG---CGGCA-GCGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 15123 0.71 0.112893
Target:  5'- --uCCgCGCCGCUGCCacuguuGUUGCCGcCGCc -3'
miRNA:   3'- cuuGG-GCGGCGGCGG------CAGCGGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 26884 0.7 0.132861
Target:  5'- --uCCUGCUGCUGCCGcCGCUGUgGa -3'
miRNA:   3'- cuuGGGCGGCGGCGGCaGCGGCAgCg -5'
194 5' -63.1 AC_000007.1 + 3779 0.7 0.13649
Target:  5'- --cUCCGCCGCCGCUucaGCCGcUGCa -3'
miRNA:   3'- cuuGGGCGGCGGCGGcagCGGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 9783 0.7 0.140211
Target:  5'- -cACCCGCUGCCGCC--CGCCacggUGCu -3'
miRNA:   3'- cuUGGGCGGCGGCGGcaGCGGca--GCG- -5'
194 5' -63.1 AC_000007.1 + 10047 0.7 0.144024
Target:  5'- aAACuCCGCCGCCGCCGUaGCgauaGaUGCa -3'
miRNA:   3'- cUUG-GGCGGCGGCGGCAgCGg---CaGCG- -5'
194 5' -63.1 AC_000007.1 + 12366 0.7 0.144024
Target:  5'- -cGCCCGCa-CCGCCGgguCCGUUGCg -3'
miRNA:   3'- cuUGGGCGgcGGCGGCagcGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 12261 0.7 0.147932
Target:  5'- --uCCaCGCCGCCGaCGUUGCCagcgCGCg -3'
miRNA:   3'- cuuGG-GCGGCGGCgGCAGCGGca--GCG- -5'
194 5' -63.1 AC_000007.1 + 33231 0.69 0.151936
Target:  5'- ---gCUGCCGCCGCCG-CuCCGUCcuGCa -3'
miRNA:   3'- cuugGGCGGCGGCGGCaGcGGCAG--CG- -5'
194 5' -63.1 AC_000007.1 + 11233 0.69 0.159816
Target:  5'- cGGGCCCGgCGCCGCggggguuCGUaaucaccaucUGCCGcCGCg -3'
miRNA:   3'- -CUUGGGCgGCGGCG-------GCA----------GCGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.