Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
194 | 5' | -63.1 | AC_000007.1 | + | 16309 | 0.74 | 0.074607 |
Target: 5'- cGGCCCGCaugGCCGcCCGUCGgCCGgUGCg -3' miRNA: 3'- cUUGGGCGg--CGGC-GGCAGC-GGCaGCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 16752 | 0.69 | 0.168953 |
Target: 5'- -uACCCGCCGCC-UgGgCGCgGUUGCg -3' miRNA: 3'- cuUGGGCGGCGGcGgCaGCGgCAGCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 17506 | 1.09 | 0.000117 |
Target: 5'- gGAACCCGCCGCCGCCGUCGCCGUCGCc -3' miRNA: 3'- -CUUGGGCGGCGGCGGCAGCGGCAGCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 17770 | 0.68 | 0.197675 |
Target: 5'- -cACCgGCgGCggCGCgCGUCGCacCGUCGCa -3' miRNA: 3'- cuUGGgCGgCG--GCG-GCAGCG--GCAGCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 17822 | 0.74 | 0.063077 |
Target: 5'- -cGCgCGCCGCCGCCGguggugCGCaCGaCGCa -3' miRNA: 3'- cuUGgGCGGCGGCGGCa-----GCG-GCaGCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 18556 | 0.71 | 0.106885 |
Target: 5'- aAACCUguGCUGCCaggGCCGUcCGCCGUUGUu -3' miRNA: 3'- cUUGGG--CGGCGG---CGGCA-GCGGCAGCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 18590 | 0.72 | 0.090615 |
Target: 5'- uAACCCGCCcuaGCCGCgCGUcccugCGCCGUgcCGCc -3' miRNA: 3'- cUUGGGCGG---CGGCG-GCA-----GCGGCA--GCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 18784 | 0.67 | 0.230565 |
Target: 5'- aGGAgCUGCUgaGCCGCCGUgCGCC--CGCu -3' miRNA: 3'- -CUUgGGCGG--CGGCGGCA-GCGGcaGCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 24011 | 0.8 | 0.024712 |
Target: 5'- aGGACgUGUCGUCcCCGUCGCCGUCGCc -3' miRNA: 3'- -CUUGgGCGGCGGcGGCAGCGGCAGCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 26793 | 0.75 | 0.06133 |
Target: 5'- ---gCCGCUGCCGCUGcCGCCGgUGCa -3' miRNA: 3'- cuugGGCGGCGGCGGCaGCGGCaGCG- -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 26884 | 0.7 | 0.132861 |
Target: 5'- --uCCUGCUGCUGCCGcCGCUGUgGa -3' miRNA: 3'- cuuGGGCGGCGGCGGCaGCGGCAgCg -5' |
|||||||
194 | 5' | -63.1 | AC_000007.1 | + | 33231 | 0.69 | 0.151936 |
Target: 5'- ---gCUGCCGCCGCCG-CuCCGUCcuGCa -3' miRNA: 3'- cuugGGCGGCGGCGGCaGcGGCAG--CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home