miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
194 5' -63.1 AC_000007.1 + 33231 0.69 0.151936
Target:  5'- ---gCUGCCGCCGCCG-CuCCGUCcuGCa -3'
miRNA:   3'- cuugGGCGGCGGCGGCaGcGGCAG--CG- -5'
194 5' -63.1 AC_000007.1 + 26884 0.7 0.132861
Target:  5'- --uCCUGCUGCUGCCGcCGCUGUgGa -3'
miRNA:   3'- cuuGGGCGGCGGCGGCaGCGGCAgCg -5'
194 5' -63.1 AC_000007.1 + 26793 0.75 0.06133
Target:  5'- ---gCCGCUGCCGCUGcCGCCGgUGCa -3'
miRNA:   3'- cuugGGCGGCGGCGGCaGCGGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 24011 0.8 0.024712
Target:  5'- aGGACgUGUCGUCcCCGUCGCCGUCGCc -3'
miRNA:   3'- -CUUGgGCGGCGGcGGCAGCGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 18784 0.67 0.230565
Target:  5'- aGGAgCUGCUgaGCCGCCGUgCGCC--CGCu -3'
miRNA:   3'- -CUUgGGCGG--CGGCGGCA-GCGGcaGCG- -5'
194 5' -63.1 AC_000007.1 + 18590 0.72 0.090615
Target:  5'- uAACCCGCCcuaGCCGCgCGUcccugCGCCGUgcCGCc -3'
miRNA:   3'- cUUGGGCGG---CGGCG-GCA-----GCGGCA--GCG- -5'
194 5' -63.1 AC_000007.1 + 18556 0.71 0.106885
Target:  5'- aAACCUguGCUGCCaggGCCGUcCGCCGUUGUu -3'
miRNA:   3'- cUUGGG--CGGCGG---CGGCA-GCGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 17822 0.74 0.063077
Target:  5'- -cGCgCGCCGCCGCCGguggugCGCaCGaCGCa -3'
miRNA:   3'- cuUGgGCGGCGGCGGCa-----GCG-GCaGCG- -5'
194 5' -63.1 AC_000007.1 + 17770 0.68 0.197675
Target:  5'- -cACCgGCgGCggCGCgCGUCGCacCGUCGCa -3'
miRNA:   3'- cuUGGgCGgCG--GCG-GCAGCG--GCAGCG- -5'
194 5' -63.1 AC_000007.1 + 17506 1.09 0.000117
Target:  5'- gGAACCCGCCGCCGCCGUCGCCGUCGCc -3'
miRNA:   3'- -CUUGGGCGGCGGCGGCAGCGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 16752 0.69 0.168953
Target:  5'- -uACCCGCCGCC-UgGgCGCgGUUGCg -3'
miRNA:   3'- cuUGGGCGGCGGcGgCaGCGgCAGCG- -5'
194 5' -63.1 AC_000007.1 + 16309 0.74 0.074607
Target:  5'- cGGCCCGCaugGCCGcCCGUCGgCCGgUGCg -3'
miRNA:   3'- cUUGGGCGg--CGGC-GGCAGC-GGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 16262 0.67 0.236476
Target:  5'- aGGgCCGCCGCCGCgCGUugggcggcagUGCCGggUCGg -3'
miRNA:   3'- cUUgGGCGGCGGCG-GCA----------GCGGC--AGCg -5'
194 5' -63.1 AC_000007.1 + 15123 0.71 0.112893
Target:  5'- --uCCgCGCCGCUGCCacuguuGUUGCCGcCGCc -3'
miRNA:   3'- cuuGG-GCGGCGGCGG------CAGCGGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 14261 0.79 0.030189
Target:  5'- gGAACCCagcGCCGCCGCCacuggCGCCG-CGCu -3'
miRNA:   3'- -CUUGGG---CGGCGGCGGca---GCGGCaGCG- -5'
194 5' -63.1 AC_000007.1 + 13903 0.66 0.267953
Target:  5'- -cGCCCGCCcacCCGUCGUCaaaggcacGaCCGUCaGCg -3'
miRNA:   3'- cuUGGGCGGc--GGCGGCAG--------C-GGCAG-CG- -5'
194 5' -63.1 AC_000007.1 + 13649 0.66 0.254973
Target:  5'- cAGCgCCGCCuCUGCCugcucgCGCUGUUGCa -3'
miRNA:   3'- cUUG-GGCGGcGGCGGca----GCGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 12366 0.7 0.144024
Target:  5'- -cGCCCGCa-CCGCCGgguCCGUUGCg -3'
miRNA:   3'- cuUGGGCGgcGGCGGCagcGGCAGCG- -5'
194 5' -63.1 AC_000007.1 + 12261 0.7 0.147932
Target:  5'- --uCCaCGCCGCCGaCGUUGCCagcgCGCg -3'
miRNA:   3'- cuuGG-GCGGCGGCgGCAGCGGca--GCG- -5'
194 5' -63.1 AC_000007.1 + 11353 0.68 0.182816
Target:  5'- --uUCUGCCGCgGCaCGUaCGCC-UCGCg -3'
miRNA:   3'- cuuGGGCGGCGgCG-GCA-GCGGcAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.