miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1940 3' -55.9 NC_001347.2 + 95483 0.66 0.967338
Target:  5'- gCGGCGccGGUGuCGGCGgauuggUUCCGg -3'
miRNA:   3'- aGCCGCaaCCGCcGCCGUaa----AAGGCg -5'
1940 3' -55.9 NC_001347.2 + 193340 0.66 0.967338
Target:  5'- gUGGUc--GGgGGCGaGCAUUcgCCGCa -3'
miRNA:   3'- aGCCGcaaCCgCCGC-CGUAAaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 51949 0.66 0.967338
Target:  5'- aCGGaCGacagUGGCGGCaGCAgc--CCGUu -3'
miRNA:   3'- aGCC-GCa---ACCGCCGcCGUaaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 117475 0.66 0.966731
Target:  5'- -aGGCGgccagcagacaGGCGGCGGC---UUCCa- -3'
miRNA:   3'- agCCGCaa---------CCGCCGCCGuaaAAGGcg -5'
1940 3' -55.9 NC_001347.2 + 180030 0.66 0.965493
Target:  5'- -gGGCGUUGuugagcauauguacuGUGGCGGCGggcagcaUCGCg -3'
miRNA:   3'- agCCGCAAC---------------CGCCGCCGUaaaa---GGCG- -5'
1940 3' -55.9 NC_001347.2 + 26237 0.66 0.964222
Target:  5'- cCGuGUGUUGGCuaCGGCGga--CCGCg -3'
miRNA:   3'- aGC-CGCAACCGccGCCGUaaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 102423 0.66 0.964222
Target:  5'- -gGGCGgu-GCGGCGcgccgcauaccGCAUUUUuaCCGCg -3'
miRNA:   3'- agCCGCaacCGCCGC-----------CGUAAAA--GGCG- -5'
1940 3' -55.9 NC_001347.2 + 77116 0.66 0.964222
Target:  5'- gUCGuCGUUGccGCGGCGGUAguugCgGCa -3'
miRNA:   3'- -AGCcGCAAC--CGCCGCCGUaaaaGgCG- -5'
1940 3' -55.9 NC_001347.2 + 222123 0.66 0.964222
Target:  5'- -aGGCac-GGCGGCuauuggauucGGCAUUggugcgCCGCg -3'
miRNA:   3'- agCCGcaaCCGCCG----------CCGUAAaa----GGCG- -5'
1940 3' -55.9 NC_001347.2 + 13154 0.66 0.964222
Target:  5'- gCGGCGUuacagcgucUGGU-GCGGCAUgagcUCuCGCc -3'
miRNA:   3'- aGCCGCA---------ACCGcCGCCGUAaa--AG-GCG- -5'
1940 3' -55.9 NC_001347.2 + 142507 0.66 0.964222
Target:  5'- uUCGGCGUgcccGGCgagacgggaGGUGGCugcUUUCuCGUg -3'
miRNA:   3'- -AGCCGCAa---CCG---------CCGCCGua-AAAG-GCG- -5'
1940 3' -55.9 NC_001347.2 + 209152 0.66 0.964222
Target:  5'- gCGGCagccacaGCGGCGGCAgccgaccaCCGCc -3'
miRNA:   3'- aGCCGcaac---CGCCGCCGUaaaa----GGCG- -5'
1940 3' -55.9 NC_001347.2 + 210406 0.66 0.963575
Target:  5'- aCGGCGUgaugcugugaUGaCGGCGGUcucaacggCCGCg -3'
miRNA:   3'- aGCCGCA----------ACcGCCGCCGuaaaa---GGCG- -5'
1940 3' -55.9 NC_001347.2 + 192046 0.66 0.960904
Target:  5'- gCGGCGacgacGGUGGCGGCGacgacaCgGCg -3'
miRNA:   3'- aGCCGCaa---CCGCCGCCGUaaaa--GgCG- -5'
1940 3' -55.9 NC_001347.2 + 152825 0.66 0.959868
Target:  5'- cUCGGCGUgcauaaagGGCacgaugucgugguuGGCGGCGUg--CaGCa -3'
miRNA:   3'- -AGCCGCAa-------CCG--------------CCGCCGUAaaaGgCG- -5'
1940 3' -55.9 NC_001347.2 + 198972 0.66 0.957379
Target:  5'- cUCGGUGagccGCGGCgauucgGGCGUg--CCGCg -3'
miRNA:   3'- -AGCCGCaac-CGCCG------CCGUAaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 113194 0.66 0.953643
Target:  5'- cCGGCG-UGGCGGCcugacugcGGCug---UCGCc -3'
miRNA:   3'- aGCCGCaACCGCCG--------CCGuaaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 84390 0.66 0.953643
Target:  5'- -gGGUGUgucgGGCcGCGGCAg---UCGCu -3'
miRNA:   3'- agCCGCAa---CCGcCGCCGUaaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 210494 0.66 0.953643
Target:  5'- gCGGCGgucGGUccaGGUcaacGGCGUUUcgCCGCg -3'
miRNA:   3'- aGCCGCaa-CCG---CCG----CCGUAAAa-GGCG- -5'
1940 3' -55.9 NC_001347.2 + 2213 0.66 0.952088
Target:  5'- aUGGCGggucCGGCGGCGUcggggaccgugCCGCg -3'
miRNA:   3'- aGCCGCaaccGCCGCCGUAaaa--------GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.