Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1940 | 3' | -55.9 | NC_001347.2 | + | 182199 | 0.66 | 0.949692 |
Target: 5'- cUCGGgGUgcgGGUGGCgGGCugcg-UCGCc -3' miRNA: 3'- -AGCCgCAa--CCGCCG-CCGuaaaaGGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 210406 | 0.66 | 0.963575 |
Target: 5'- aCGGCGUgaugcugugaUGaCGGCGGUcucaacggCCGCg -3' miRNA: 3'- aGCCGCA----------ACcGCCGCCGuaaaa---GGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 192046 | 0.66 | 0.960904 |
Target: 5'- gCGGCGacgacGGUGGCGGCGacgacaCgGCg -3' miRNA: 3'- aGCCGCaa---CCGCCGCCGUaaaa--GgCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 152825 | 0.66 | 0.959868 |
Target: 5'- cUCGGCGUgcauaaagGGCacgaugucgugguuGGCGGCGUg--CaGCa -3' miRNA: 3'- -AGCCGCAa-------CCG--------------CCGCCGUAaaaGgCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 198972 | 0.66 | 0.957379 |
Target: 5'- cUCGGUGagccGCGGCgauucgGGCGUg--CCGCg -3' miRNA: 3'- -AGCCGCaac-CGCCG------CCGUAaaaGGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 113194 | 0.66 | 0.953643 |
Target: 5'- cCGGCG-UGGCGGCcugacugcGGCug---UCGCc -3' miRNA: 3'- aGCCGCaACCGCCG--------CCGuaaaaGGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 84390 | 0.66 | 0.953643 |
Target: 5'- -gGGUGUgucgGGCcGCGGCAg---UCGCu -3' miRNA: 3'- agCCGCAa---CCGcCGCCGUaaaaGGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 210494 | 0.66 | 0.953643 |
Target: 5'- gCGGCGgucGGUccaGGUcaacGGCGUUUcgCCGCg -3' miRNA: 3'- aGCCGCaa-CCG---CCG----CCGUAAAa-GGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 2213 | 0.66 | 0.952088 |
Target: 5'- aUGGCGggucCGGCGGCGUcggggaccgugCCGCg -3' miRNA: 3'- aGCCGCaaccGCCGCCGUAaaa--------GGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 26237 | 0.66 | 0.964222 |
Target: 5'- cCGuGUGUUGGCuaCGGCGga--CCGCg -3' miRNA: 3'- aGC-CGCAACCGccGCCGUaaaaGGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 102423 | 0.66 | 0.964222 |
Target: 5'- -gGGCGgu-GCGGCGcgccgcauaccGCAUUUUuaCCGCg -3' miRNA: 3'- agCCGCaacCGCCGC-----------CGUAAAA--GGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 77116 | 0.66 | 0.964222 |
Target: 5'- gUCGuCGUUGccGCGGCGGUAguugCgGCa -3' miRNA: 3'- -AGCcGCAAC--CGCCGCCGUaaaaGgCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 193340 | 0.66 | 0.967338 |
Target: 5'- gUGGUc--GGgGGCGaGCAUUcgCCGCa -3' miRNA: 3'- aGCCGcaaCCgCCGC-CGUAAaaGGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 117475 | 0.66 | 0.966731 |
Target: 5'- -aGGCGgccagcagacaGGCGGCGGC---UUCCa- -3' miRNA: 3'- agCCGCaa---------CCGCCGCCGuaaAAGGcg -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 51949 | 0.66 | 0.967338 |
Target: 5'- aCGGaCGacagUGGCGGCaGCAgc--CCGUu -3' miRNA: 3'- aGCC-GCa---ACCGCCGcCGUaaaaGGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 209152 | 0.66 | 0.964222 |
Target: 5'- gCGGCagccacaGCGGCGGCAgccgaccaCCGCc -3' miRNA: 3'- aGCCGcaac---CGCCGCCGUaaaa----GGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 180030 | 0.66 | 0.965493 |
Target: 5'- -gGGCGUUGuugagcauauguacuGUGGCGGCGggcagcaUCGCg -3' miRNA: 3'- agCCGCAAC---------------CGCCGCCGUaaaa---GGCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 142507 | 0.66 | 0.964222 |
Target: 5'- uUCGGCGUgcccGGCgagacgggaGGUGGCugcUUUCuCGUg -3' miRNA: 3'- -AGCCGCAa---CCG---------CCGCCGua-AAAG-GCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 13154 | 0.66 | 0.964222 |
Target: 5'- gCGGCGUuacagcgucUGGU-GCGGCAUgagcUCuCGCc -3' miRNA: 3'- aGCCGCA---------ACCGcCGCCGUAaa--AG-GCG- -5' |
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1940 | 3' | -55.9 | NC_001347.2 | + | 222123 | 0.66 | 0.964222 |
Target: 5'- -aGGCac-GGCGGCuauuggauucGGCAUUggugcgCCGCg -3' miRNA: 3'- agCCGcaaCCGCCG----------CCGUAAaa----GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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