miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1940 3' -55.9 NC_001347.2 + 140210 0.84 0.200691
Target:  5'- uUUGGCGUUGGUGuGUGGCAcgugUCCGCa -3'
miRNA:   3'- -AGCCGCAACCGC-CGCCGUaaa-AGGCG- -5'
1940 3' -55.9 NC_001347.2 + 75411 0.82 0.237075
Target:  5'- gCGGCGgccgUGGCGGCGGCAg---CgGCg -3'
miRNA:   3'- aGCCGCa---ACCGCCGCCGUaaaaGgCG- -5'
1940 3' -55.9 NC_001347.2 + 173546 0.79 0.340815
Target:  5'- gCGGCGgUGGUGGCGGCAgccucucUUCGCu -3'
miRNA:   3'- aGCCGCaACCGCCGCCGUaaa----AGGCG- -5'
1940 3' -55.9 NC_001347.2 + 97906 0.79 0.355879
Target:  5'- uUCGGCGUcgGGCGGCGGCGguaacacaCgGCg -3'
miRNA:   3'- -AGCCGCAa-CCGCCGCCGUaaaa----GgCG- -5'
1940 3' -55.9 NC_001347.2 + 142999 0.78 0.419818
Target:  5'- cCGGCGgcGGCGGUGGUggaggagGUUgcgCCGCa -3'
miRNA:   3'- aGCCGCaaCCGCCGCCG-------UAAaa-GGCG- -5'
1940 3' -55.9 NC_001347.2 + 90222 0.77 0.43795
Target:  5'- aCGGCG-UGGCGGCGuCGUUUUUCGg -3'
miRNA:   3'- aGCCGCaACCGCCGCcGUAAAAGGCg -5'
1940 3' -55.9 NC_001347.2 + 106238 0.77 0.46461
Target:  5'- -aGGCGgcGGCGGUGGCGUUggCaGCa -3'
miRNA:   3'- agCCGCaaCCGCCGCCGUAAaaGgCG- -5'
1940 3' -55.9 NC_001347.2 + 199 0.77 0.46461
Target:  5'- cCGGCGgggugUGGUGGCGGgGUgugUCgGCg -3'
miRNA:   3'- aGCCGCa----ACCGCCGCCgUAaa-AGgCG- -5'
1940 3' -55.9 NC_001347.2 + 229678 0.77 0.46461
Target:  5'- cCGGCGgggugUGGUGGCGGgGUgugUCgGCg -3'
miRNA:   3'- aGCCGCa----ACCGCCGCCgUAaa-AGgCG- -5'
1940 3' -55.9 NC_001347.2 + 1196 0.77 0.46461
Target:  5'- -gGGCGccgugUGGCGcGCGGCGUUUUUgGCc -3'
miRNA:   3'- agCCGCa----ACCGC-CGCCGUAAAAGgCG- -5'
1940 3' -55.9 NC_001347.2 + 162171 0.76 0.482846
Target:  5'- gUCGGCG--GGCGGgGGCGUgaUCCGa -3'
miRNA:   3'- -AGCCGCaaCCGCCgCCGUAaaAGGCg -5'
1940 3' -55.9 NC_001347.2 + 173665 0.76 0.497679
Target:  5'- gUGGCGgcGGUGGCGGCAagaagcacgaCCGCg -3'
miRNA:   3'- aGCCGCaaCCGCCGCCGUaaaa------GGCG- -5'
1940 3' -55.9 NC_001347.2 + 66793 0.76 0.501419
Target:  5'- gUGGUGgcGGCGGCGGCAguggagCCGa -3'
miRNA:   3'- aGCCGCaaCCGCCGCCGUaaaa--GGCg -5'
1940 3' -55.9 NC_001347.2 + 178083 0.75 0.539453
Target:  5'- gUCGGCGUUGGgcaaGGUGGCGc--UUCGCu -3'
miRNA:   3'- -AGCCGCAACCg---CCGCCGUaaaAGGCG- -5'
1940 3' -55.9 NC_001347.2 + 47122 0.75 0.578416
Target:  5'- aUGGUaugGgcGGCGGCGGCAaUggCCGCg -3'
miRNA:   3'- aGCCG---CaaCCGCCGCCGUaAaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 139463 0.73 0.667542
Target:  5'- aCGGCGgcgaGGCGGUGcGCGUg--CCGUu -3'
miRNA:   3'- aGCCGCaa--CCGCCGC-CGUAaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 228366 0.73 0.67741
Target:  5'- gCGGUGgaugUGGCGggguGCGGCggUUUCCGa -3'
miRNA:   3'- aGCCGCa---ACCGC----CGCCGuaAAAGGCg -5'
1940 3' -55.9 NC_001347.2 + 182293 0.73 0.687242
Target:  5'- gCGGCGUcguugccggGGCGGCuGCuccaggUCCGCg -3'
miRNA:   3'- aGCCGCAa--------CCGCCGcCGuaaa--AGGCG- -5'
1940 3' -55.9 NC_001347.2 + 86253 0.72 0.716448
Target:  5'- cUCGGCGaucucGGCgcgcgaagcuucGGCGGCGUg--CCGCu -3'
miRNA:   3'- -AGCCGCaa---CCG------------CCGCCGUAaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 163221 0.72 0.716448
Target:  5'- gUGGCGUUGGCGGCacGCAga-UCCu- -3'
miRNA:   3'- aGCCGCAACCGCCGc-CGUaaaAGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.