miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1940 3' -55.9 NC_001347.2 + 150632 0.66 0.949692
Target:  5'- aCGGCGccGGCGGUacugcGGCgg-UUUCGUa -3'
miRNA:   3'- aGCCGCaaCCGCCG-----CCGuaaAAGGCG- -5'
1940 3' -55.9 NC_001347.2 + 101166 0.66 0.949692
Target:  5'- gCGGC-UUGGCcGCGGCGgcgcaCGCc -3'
miRNA:   3'- aGCCGcAACCGcCGCCGUaaaagGCG- -5'
1940 3' -55.9 NC_001347.2 + 78433 0.66 0.949692
Target:  5'- cCGGCcc-GGCGGCGcccgaGCGggacaUCCGCg -3'
miRNA:   3'- aGCCGcaaCCGCCGC-----CGUaaa--AGGCG- -5'
1940 3' -55.9 NC_001347.2 + 182199 0.66 0.949692
Target:  5'- cUCGGgGUgcgGGUGGCgGGCugcg-UCGCc -3'
miRNA:   3'- -AGCCgCAa--CCGCCG-CCGuaaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 7951 0.67 0.947216
Target:  5'- -aGGUGgugcgacugacggUGGCGGCGGCAgaccaacaUGCg -3'
miRNA:   3'- agCCGCa------------ACCGCCGCCGUaaaag---GCG- -5'
1940 3' -55.9 NC_001347.2 + 142553 0.67 0.945523
Target:  5'- cCGGCGaagacgaGGCuGGCGGCG---UCgGCg -3'
miRNA:   3'- aGCCGCaa-----CCG-CCGCCGUaaaAGgCG- -5'
1940 3' -55.9 NC_001347.2 + 228896 0.67 0.945094
Target:  5'- -aGGUGUUGGCGggccugugcgcaaGCaGCGUagUCUGCg -3'
miRNA:   3'- agCCGCAACCGC-------------CGcCGUAaaAGGCG- -5'
1940 3' -55.9 NC_001347.2 + 7881 0.67 0.944662
Target:  5'- aCGGCGguagugaccaggUGGUcaguGGCGGCGacaaggCCGCc -3'
miRNA:   3'- aGCCGCa-----------ACCG----CCGCCGUaaaa--GGCG- -5'
1940 3' -55.9 NC_001347.2 + 65720 0.67 0.936521
Target:  5'- aCGGUGgcGGCGGUGGaggg--CgCGCg -3'
miRNA:   3'- aGCCGCaaCCGCCGCCguaaaaG-GCG- -5'
1940 3' -55.9 NC_001347.2 + 198373 0.67 0.936521
Target:  5'- cUGGCGcaggugGGUGGCGcGCGgg-UCgCGCa -3'
miRNA:   3'- aGCCGCaa----CCGCCGC-CGUaaaAG-GCG- -5'
1940 3' -55.9 NC_001347.2 + 139093 0.67 0.936521
Target:  5'- aCGGUGgaGGCGGauuuCGGCGUc-UCUGUg -3'
miRNA:   3'- aGCCGCaaCCGCC----GCCGUAaaAGGCG- -5'
1940 3' -55.9 NC_001347.2 + 2100 0.67 0.931685
Target:  5'- aCGGCGccgccGGCGGgGGCGcgaUuuGCg -3'
miRNA:   3'- aGCCGCaa---CCGCCgCCGUaaaAggCG- -5'
1940 3' -55.9 NC_001347.2 + 152396 0.67 0.931685
Target:  5'- aCGGCGggUGGagaugaGGCGGCGUggaCUGg -3'
miRNA:   3'- aGCCGCa-ACCg-----CCGCCGUAaaaGGCg -5'
1940 3' -55.9 NC_001347.2 + 29738 0.67 0.926624
Target:  5'- gUGGUGgcugggagUGGUGGCGGCAg---CCa- -3'
miRNA:   3'- aGCCGCa-------ACCGCCGCCGUaaaaGGcg -5'
1940 3' -55.9 NC_001347.2 + 77313 0.67 0.924536
Target:  5'- -gGGCGUgGGCcGCGGCGUggaugacgaggCCGUc -3'
miRNA:   3'- agCCGCAaCCGcCGCCGUAaaa--------GGCG- -5'
1940 3' -55.9 NC_001347.2 + 15012 0.67 0.921338
Target:  5'- cCGuCGUUGGUGGUGgGCug--UCCGUg -3'
miRNA:   3'- aGCcGCAACCGCCGC-CGuaaaAGGCG- -5'
1940 3' -55.9 NC_001347.2 + 199770 0.67 0.921338
Target:  5'- cUCGGUuucUUGGCGGCGcCGgug-CCGCc -3'
miRNA:   3'- -AGCCGc--AACCGCCGCcGUaaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 173734 0.67 0.920797
Target:  5'- gCGGUGgcGGCGGCGGUgaucacgaccacgGUcUUUCCu- -3'
miRNA:   3'- aGCCGCaaCCGCCGCCG-------------UA-AAAGGcg -5'
1940 3' -55.9 NC_001347.2 + 63831 0.68 0.915827
Target:  5'- gCGGCGaUGGCGG-GGCugguugcUUUUCCcgGCc -3'
miRNA:   3'- aGCCGCaACCGCCgCCGu------AAAAGG--CG- -5'
1940 3' -55.9 NC_001347.2 + 226754 0.68 0.915827
Target:  5'- cCGG-GUcGGCGuCGGCAUg--CCGCu -3'
miRNA:   3'- aGCCgCAaCCGCcGCCGUAaaaGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.