miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1940 3' -55.9 NC_001347.2 + 199 0.77 0.46461
Target:  5'- cCGGCGgggugUGGUGGCGGgGUgugUCgGCg -3'
miRNA:   3'- aGCCGCa----ACCGCCGCCgUAaa-AGgCG- -5'
1940 3' -55.9 NC_001347.2 + 1196 0.77 0.46461
Target:  5'- -gGGCGccgugUGGCGcGCGGCGUUUUUgGCc -3'
miRNA:   3'- agCCGCa----ACCGC-CGCCGUAAAAGgCG- -5'
1940 3' -55.9 NC_001347.2 + 1591 0.68 0.890913
Target:  5'- aCGGCGcgGGCGaggugguGCGGCugua-CCGCu -3'
miRNA:   3'- aGCCGCaaCCGC-------CGCCGuaaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 1965 0.7 0.844183
Target:  5'- cCGGCGacggGGaCGGCGGCGgggacgacgucCCGCc -3'
miRNA:   3'- aGCCGCaa--CC-GCCGCCGUaaaa-------GGCG- -5'
1940 3' -55.9 NC_001347.2 + 2100 0.67 0.931685
Target:  5'- aCGGCGccgccGGCGGgGGCGcgaUuuGCg -3'
miRNA:   3'- aGCCGCaa---CCGCCgCCGUaaaAggCG- -5'
1940 3' -55.9 NC_001347.2 + 2213 0.66 0.952088
Target:  5'- aUGGCGggucCGGCGGCGUcggggaccgugCCGCg -3'
miRNA:   3'- aGCCGCaaccGCCGCCGUAaaa--------GGCG- -5'
1940 3' -55.9 NC_001347.2 + 5560 0.7 0.816595
Target:  5'- cCGGCaaGUUGcGCGGUgggGGCGUgccCCGCa -3'
miRNA:   3'- aGCCG--CAAC-CGCCG---CCGUAaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 7823 0.71 0.788961
Target:  5'- gUGGCGUgacgaagcugguacGGUGGCGGCGgacugucagguaUCCGCg -3'
miRNA:   3'- aGCCGCAa-------------CCGCCGCCGUaaa---------AGGCG- -5'
1940 3' -55.9 NC_001347.2 + 7881 0.67 0.944662
Target:  5'- aCGGCGguagugaccaggUGGUcaguGGCGGCGacaaggCCGCc -3'
miRNA:   3'- aGCCGCa-----------ACCG----CCGCCGUaaaa--GGCG- -5'
1940 3' -55.9 NC_001347.2 + 7951 0.67 0.947216
Target:  5'- -aGGUGgugcgacugacggUGGCGGCGGCAgaccaacaUGCg -3'
miRNA:   3'- agCCGCa------------ACCGCCGCCGUaaaag---GCG- -5'
1940 3' -55.9 NC_001347.2 + 13154 0.66 0.964222
Target:  5'- gCGGCGUuacagcgucUGGU-GCGGCAUgagcUCuCGCc -3'
miRNA:   3'- aGCCGCA---------ACCGcCGCCGUAaa--AG-GCG- -5'
1940 3' -55.9 NC_001347.2 + 15012 0.67 0.921338
Target:  5'- cCGuCGUUGGUGGUGgGCug--UCCGUg -3'
miRNA:   3'- aGCcGCAACCGCCGC-CGuaaaAGGCG- -5'
1940 3' -55.9 NC_001347.2 + 17007 0.69 0.848842
Target:  5'- --cGCGUuuaccauuUGGCaGGCGcGCGUggUCCGCg -3'
miRNA:   3'- agcCGCA--------ACCG-CCGC-CGUAaaAGGCG- -5'
1940 3' -55.9 NC_001347.2 + 26237 0.66 0.964222
Target:  5'- cCGuGUGUUGGCuaCGGCGga--CCGCg -3'
miRNA:   3'- aGC-CGCAACCGccGCCGUaaaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 29738 0.67 0.926624
Target:  5'- gUGGUGgcugggagUGGUGGCGGCAg---CCa- -3'
miRNA:   3'- aGCCGCa-------ACCGCCGCCGUaaaaGGcg -5'
1940 3' -55.9 NC_001347.2 + 36399 0.71 0.790731
Target:  5'- gCGGCucgGGCuGGCGuGCuGUUUUCCGUg -3'
miRNA:   3'- aGCCGcaaCCG-CCGC-CG-UAAAAGGCG- -5'
1940 3' -55.9 NC_001347.2 + 37168 0.68 0.891564
Target:  5'- -gGGCGgUGGCGGCcuuGGCGgucgggUCUGUc -3'
miRNA:   3'- agCCGCaACCGCCG---CCGUaaa---AGGCG- -5'
1940 3' -55.9 NC_001347.2 + 44053 0.71 0.772802
Target:  5'- gUGGCGcugggGGUGGCGGCAgugguaCUGCu -3'
miRNA:   3'- aGCCGCaa---CCGCCGCCGUaaaa--GGCG- -5'
1940 3' -55.9 NC_001347.2 + 47122 0.75 0.578416
Target:  5'- aUGGUaugGgcGGCGGCGGCAaUggCCGCg -3'
miRNA:   3'- aGCCG---CaaCCGCCGCCGUaAaaGGCG- -5'
1940 3' -55.9 NC_001347.2 + 51255 0.68 0.904136
Target:  5'- -gGGCGUUGGCcuGUGGauaGaUUUCUGCg -3'
miRNA:   3'- agCCGCAACCGc-CGCCg--UaAAAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.