miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1940 5' -55.1 NC_001347.2 + 173420 0.66 0.970249
Target:  5'- -cGCUGUUGUa--CGugGCCAgCCGCa -3'
miRNA:   3'- gaCGAUAACGacgGUugCGGU-GGCGg -5'
1940 5' -55.1 NC_001347.2 + 93381 0.66 0.970249
Target:  5'- -gGCgaaacGCUGUgGcaacGCGCCGCCGUCc -3'
miRNA:   3'- gaCGauaa-CGACGgU----UGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 114483 0.66 0.970249
Target:  5'- aCUGCUGacGCgcuuUGUgCAGCGCCACaccgGCCu -3'
miRNA:   3'- -GACGAUaaCG----ACG-GUUGCGGUGg---CGG- -5'
1940 5' -55.1 NC_001347.2 + 82906 0.66 0.970249
Target:  5'- -aGCga--GCggGCCGcCGCUAUCGCCa -3'
miRNA:   3'- gaCGauaaCGa-CGGUuGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 39687 0.66 0.967276
Target:  5'- gUGCacggcGCgUGCUGGCGCCGCCuuggcGCCa -3'
miRNA:   3'- gACGauaa-CG-ACGGUUGCGGUGG-----CGG- -5'
1940 5' -55.1 NC_001347.2 + 170351 0.66 0.967276
Target:  5'- -cGCUuUUGCggcguacaggaGCCGGCGCgggaGCUGCCg -3'
miRNA:   3'- gaCGAuAACGa----------CGGUUGCGg---UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 96911 0.66 0.964098
Target:  5'- -gGCUAacaaaGCCcGgGCCGCCGCCa -3'
miRNA:   3'- gaCGAUaacgaCGGuUgCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 94277 0.66 0.964098
Target:  5'- -gGCcc--GCUGCCAAgucCGCCGCuCGCg -3'
miRNA:   3'- gaCGauaaCGACGGUU---GCGGUG-GCGg -5'
1940 5' -55.1 NC_001347.2 + 82468 0.66 0.964098
Target:  5'- gCUGCUcuagGCcgcGCCGACGCuCAUCGgCg -3'
miRNA:   3'- -GACGAuaa-CGa--CGGUUGCG-GUGGCgG- -5'
1940 5' -55.1 NC_001347.2 + 175427 0.66 0.963437
Target:  5'- gUGCccgacgacgGUUuCC-ACGCCACCGCCg -3'
miRNA:   3'- gACGauaa-----CGAcGGuUGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 43122 0.66 0.96071
Target:  5'- aCUGCgaucagcgGCaUGCCGACGCCGacCCGg- -3'
miRNA:   3'- -GACGauaa----CG-ACGGUUGCGGU--GGCgg -5'
1940 5' -55.1 NC_001347.2 + 161615 0.66 0.96071
Target:  5'- -------cGCUGCCAGaccgcuuCCACCGCCu -3'
miRNA:   3'- gacgauaaCGACGGUUgc-----GGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 62764 0.66 0.96071
Target:  5'- -aGCg---GCgGCCGACcccgccguugcgGCCGCCGCUc -3'
miRNA:   3'- gaCGauaaCGaCGGUUG------------CGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 28109 0.66 0.957107
Target:  5'- aCUGUcg-UGUUccaGaCCAGCGCCACCauaGCCa -3'
miRNA:   3'- -GACGauaACGA---C-GGUUGCGGUGG---CGG- -5'
1940 5' -55.1 NC_001347.2 + 118543 0.66 0.957107
Target:  5'- aCUGCag--GCUGUgGGuggcgUGCCACCGCa -3'
miRNA:   3'- -GACGauaaCGACGgUU-----GCGGUGGCGg -5'
1940 5' -55.1 NC_001347.2 + 222807 0.66 0.957107
Target:  5'- -cGCa---GCUGUCuuCGCCGCCGCn -3'
miRNA:   3'- gaCGauaaCGACGGuuGCGGUGGCGg -5'
1940 5' -55.1 NC_001347.2 + 183096 0.66 0.957107
Target:  5'- aCUGCUG-UGUUGCCG-CGCaaguuCCaGCCc -3'
miRNA:   3'- -GACGAUaACGACGGUuGCGgu---GG-CGG- -5'
1940 5' -55.1 NC_001347.2 + 81514 0.66 0.957107
Target:  5'- gUGCUGcUGCUGacuuccaCGACGUuguuuuCACCGUCg -3'
miRNA:   3'- gACGAUaACGACg------GUUGCG------GUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 87985 0.66 0.957107
Target:  5'- gUGUgacgUGgaGUCGGCcuCCACCGCCg -3'
miRNA:   3'- gACGaua-ACgaCGGUUGc-GGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 21511 0.66 0.957107
Target:  5'- gCUGcCUGUuccUGCUGCU-ACGCgGuCCGUCg -3'
miRNA:   3'- -GAC-GAUA---ACGACGGuUGCGgU-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.