miRNA display CGI


Results 1 - 20 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1940 5' -55.1 NC_001347.2 + 116644 0.82 0.260188
Target:  5'- uUGCUcUUGCUGagcugcaugagcaCGGCGCCGCCGCCg -3'
miRNA:   3'- gACGAuAACGACg------------GUUGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 87637 0.8 0.315863
Target:  5'- gCUGCUGUUGCUcGCCAGCGgCGCgCGUg -3'
miRNA:   3'- -GACGAUAACGA-CGGUUGCgGUG-GCGg -5'
1940 5' -55.1 NC_001347.2 + 92249 0.8 0.337817
Target:  5'- cCUGCcc--GCagGCCGugGCCGCCGCCa -3'
miRNA:   3'- -GACGauaaCGa-CGGUugCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 199587 0.8 0.345378
Target:  5'- gCUGCUAccgccgcgcUGCUGUUAucguCGCCACCGCCg -3'
miRNA:   3'- -GACGAUa--------ACGACGGUu---GCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 222751 0.79 0.384977
Target:  5'- -cGCUGccGCgGCCAuUGCCGCCGCCg -3'
miRNA:   3'- gaCGAUaaCGaCGGUuGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 85308 0.78 0.405023
Target:  5'- -cGCccggGCUGCCccgcagguggugaucAGCGCCGCCGCCa -3'
miRNA:   3'- gaCGauaaCGACGG---------------UUGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 156634 0.78 0.418746
Target:  5'- -cGCUGgcggcgccGCUGCCGGgccucggcCGCCGCCGCCa -3'
miRNA:   3'- gaCGAUaa------CGACGGUU--------GCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 65882 0.77 0.463384
Target:  5'- -cGCUG--GCggGCCGAcCGCCGCCGCCc -3'
miRNA:   3'- gaCGAUaaCGa-CGGUU-GCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 39318 0.77 0.463384
Target:  5'- uUGCUAUUGUUGCCGcuacucggagggGCGCCcgGCgGCCc -3'
miRNA:   3'- gACGAUAACGACGGU------------UGCGG--UGgCGG- -5'
1940 5' -55.1 NC_001347.2 + 35324 0.77 0.481926
Target:  5'- gUGCUAUgGCUGCuCAAUGCCACCa-- -3'
miRNA:   3'- gACGAUAaCGACG-GUUGCGGUGGcgg -5'
1940 5' -55.1 NC_001347.2 + 191965 0.76 0.491331
Target:  5'- -cGCUcgUcGCUGUCGcCGCCACCGCa -3'
miRNA:   3'- gaCGAuaA-CGACGGUuGCGGUGGCGg -5'
1940 5' -55.1 NC_001347.2 + 201237 0.76 0.50082
Target:  5'- -------cGCUGCCAACGCCgucaagGCCGCCu -3'
miRNA:   3'- gacgauaaCGACGGUUGCGG------UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 39195 0.76 0.50082
Target:  5'- gUGCUGUUG--GCCAaaaACGCCGCgCGCCa -3'
miRNA:   3'- gACGAUAACgaCGGU---UGCGGUG-GCGG- -5'
1940 5' -55.1 NC_001347.2 + 68035 0.76 0.51039
Target:  5'- gUGCUGaccgccGCUcccGCCGcCGCCACCGCCa -3'
miRNA:   3'- gACGAUaa----CGA---CGGUuGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 228702 0.76 0.51039
Target:  5'- -cGCUugcGCUGUCGGCccagucGCCACCGCCg -3'
miRNA:   3'- gaCGAuaaCGACGGUUG------CGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 128117 0.76 0.51039
Target:  5'- cCUGCccgcGUUGCCccuguCGCCGCCGCCa -3'
miRNA:   3'- -GACGauaaCGACGGuu---GCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 159286 0.75 0.549371
Target:  5'- gUGCUGgcgGC-GCCgGGCGCCACgGCCa -3'
miRNA:   3'- gACGAUaa-CGaCGG-UUGCGGUGgCGG- -5'
1940 5' -55.1 NC_001347.2 + 63097 0.75 0.559268
Target:  5'- -gGCaagUGCcGCCGugGCCGCCGCg -3'
miRNA:   3'- gaCGauaACGaCGGUugCGGUGGCGg -5'
1940 5' -55.1 NC_001347.2 + 193704 0.75 0.589228
Target:  5'- gCUGCUggcuuuccgcgaGUUGCUgGCCuGCGaggaCACCGCCg -3'
miRNA:   3'- -GACGA------------UAACGA-CGGuUGCg---GUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 188859 0.75 0.589228
Target:  5'- cCUGCUGgcgccggcGCUGCCAuccucACGCCGaCGCCu -3'
miRNA:   3'- -GACGAUaa------CGACGGU-----UGCGGUgGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.