miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1940 5' -55.1 NC_001347.2 + 38417 0.66 0.953286
Target:  5'- -cGCUcgccGCUGgCGGCGacgucguccCCGCCGCCg -3'
miRNA:   3'- gaCGAuaa-CGACgGUUGC---------GGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 66718 0.66 0.953286
Target:  5'- -gGCUGUUuCUaCCAcCGCCaccACCGCCg -3'
miRNA:   3'- gaCGAUAAcGAcGGUuGCGG---UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 178878 0.66 0.953286
Target:  5'- -aGCga--GUUGUCcuCGUCGCCGCCg -3'
miRNA:   3'- gaCGauaaCGACGGuuGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 19738 0.67 0.949241
Target:  5'- uCUGCgccuuUUGCUgGCUggUGUUGCCGCa -3'
miRNA:   3'- -GACGau---AACGA-CGGuuGCGGUGGCGg -5'
1940 5' -55.1 NC_001347.2 + 79038 0.67 0.949241
Target:  5'- -aGCUGauUUGCaGCCGcgagaaggcGCGUCGgCGCCa -3'
miRNA:   3'- gaCGAU--AACGaCGGU---------UGCGGUgGCGG- -5'
1940 5' -55.1 NC_001347.2 + 155124 0.67 0.949241
Target:  5'- cCUGgUAUgagGCgGCCGcCGCgGCgGCCa -3'
miRNA:   3'- -GACgAUAa--CGaCGGUuGCGgUGgCGG- -5'
1940 5' -55.1 NC_001347.2 + 113429 0.67 0.949241
Target:  5'- -aGCag-UGCUGCCGcagcGCuGCCACUGUg -3'
miRNA:   3'- gaCGauaACGACGGU----UG-CGGUGGCGg -5'
1940 5' -55.1 NC_001347.2 + 187349 0.67 0.949241
Target:  5'- gUGC-GUUGCgugGCCGuggcGCGUCGCgGCUa -3'
miRNA:   3'- gACGaUAACGa--CGGU----UGCGGUGgCGG- -5'
1940 5' -55.1 NC_001347.2 + 196144 0.67 0.949241
Target:  5'- -cGCUGc--CUGCCGGCGgcCCugUGCCg -3'
miRNA:   3'- gaCGAUaacGACGGUUGC--GGugGCGG- -5'
1940 5' -55.1 NC_001347.2 + 90852 0.67 0.94497
Target:  5'- -cGCUc--GCa-CCAcCGCCGCCGCCa -3'
miRNA:   3'- gaCGAuaaCGacGGUuGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 214639 0.67 0.94497
Target:  5'- -cGUg---GCUucGCCAGCGUCGCCaaGCCg -3'
miRNA:   3'- gaCGauaaCGA--CGGUUGCGGUGG--CGG- -5'
1940 5' -55.1 NC_001347.2 + 41219 0.67 0.94497
Target:  5'- aCUGCUggUGCaUGUgggGACGCUucggaaccauggGCCGCCa -3'
miRNA:   3'- -GACGAuaACG-ACGg--UUGCGG------------UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 113641 0.67 0.94497
Target:  5'- -gGCUGgagaGCgagagGCCGGCGUaGCUGCCg -3'
miRNA:   3'- gaCGAUaa--CGa----CGGUUGCGgUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 97600 0.67 0.94497
Target:  5'- -cGUgucUGggGCCggUGCUGCCGCCg -3'
miRNA:   3'- gaCGauaACgaCGGuuGCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 2074 0.67 0.940471
Target:  5'- -cGCUGUaccugUGCcuccgcaGCCGuACGgCGCCGCCg -3'
miRNA:   3'- gaCGAUA-----ACGa------CGGU-UGCgGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 221032 0.67 0.940471
Target:  5'- -gGCgcgUGCacGCgAACGCCgcACCGCCc -3'
miRNA:   3'- gaCGauaACGa-CGgUUGCGG--UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 150413 0.67 0.940471
Target:  5'- uUGCUGUgucaccuaacGCUGCUAucauCuCUACCGCCg -3'
miRNA:   3'- gACGAUAa---------CGACGGUu---GcGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 181737 0.67 0.940471
Target:  5'- cCUGCgaccGCUGCguGCGCCgACgGCg -3'
miRNA:   3'- -GACGauaaCGACGguUGCGG-UGgCGg -5'
1940 5' -55.1 NC_001347.2 + 197089 0.67 0.940471
Target:  5'- -aGCUGa-GCaaccacGCCAAcCGCUGCCGCCg -3'
miRNA:   3'- gaCGAUaaCGa-----CGGUU-GCGGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 37068 0.67 0.940471
Target:  5'- gUGCUG--GCgGCCGugGCCugUgGCCc -3'
miRNA:   3'- gACGAUaaCGaCGGUugCGGugG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.