miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1940 5' -55.1 NC_001347.2 + 1901 0.68 0.914491
Target:  5'- gUGCUGcgGCUgGCUGGCGCUgggcgcgguGCUGCCc -3'
miRNA:   3'- gACGAUaaCGA-CGGUUGCGG---------UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 2074 0.67 0.940471
Target:  5'- -cGCUGUaccugUGCcuccgcaGCCGuACGgCGCCGCCg -3'
miRNA:   3'- gaCGAUA-----ACGa------CGGU-UGCgGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 2252 0.69 0.86108
Target:  5'- aUGCUGguggUGCUGCUggacgagcugGGCGCCguguucggguACUGCCc -3'
miRNA:   3'- gACGAUa---ACGACGG----------UUGCGG----------UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 2370 0.73 0.699917
Target:  5'- -cGCUGgcGCUgggacgcgaGUCGGCGcCCGCCGCCg -3'
miRNA:   3'- gaCGAUaaCGA---------CGGUUGC-GGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 8636 0.69 0.868512
Target:  5'- -aGCgggUGCgcaGCCAACGUCgACCGUCc -3'
miRNA:   3'- gaCGauaACGa--CGGUUGCGG-UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 16373 0.7 0.840827
Target:  5'- aUGCUGcUGCgucacggucaugacGCCGACGCguugGCCGCCu -3'
miRNA:   3'- gACGAUaACGa-------------CGGUUGCGg---UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 16500 0.7 0.853446
Target:  5'- gCUGCUugacggacUGCUgGCCcuucgagguAGCGCCAgCCGCCc -3'
miRNA:   3'- -GACGAua------ACGA-CGG---------UUGCGGU-GGCGG- -5'
1940 5' -55.1 NC_001347.2 + 17331 0.67 0.930777
Target:  5'- -cGCgGUUGCcGCgcgUAugGCCGCCgGCCa -3'
miRNA:   3'- gaCGaUAACGaCG---GUugCGGUGG-CGG- -5'
1940 5' -55.1 NC_001347.2 + 19738 0.67 0.949241
Target:  5'- uCUGCgccuuUUGCUgGCUggUGUUGCCGCa -3'
miRNA:   3'- -GACGau---AACGA-CGGuuGCGGUGGCGg -5'
1940 5' -55.1 NC_001347.2 + 20306 0.68 0.896123
Target:  5'- aCUGCUcagacgacgGUcGCUGCCAcagcagcgGCGUCGCC-CCa -3'
miRNA:   3'- -GACGA---------UAaCGACGGU--------UGCGGUGGcGG- -5'
1940 5' -55.1 NC_001347.2 + 21511 0.66 0.957107
Target:  5'- gCUGcCUGUuccUGCUGCU-ACGCgGuCCGUCg -3'
miRNA:   3'- -GAC-GAUA---ACGACGGuUGCGgU-GGCGG- -5'
1940 5' -55.1 NC_001347.2 + 21615 0.72 0.758151
Target:  5'- uUGCUGaUG-UGCCAGcCGUCGCCGCa -3'
miRNA:   3'- gACGAUaACgACGGUU-GCGGUGGCGg -5'
1940 5' -55.1 NC_001347.2 + 28109 0.66 0.957107
Target:  5'- aCUGUcg-UGUUccaGaCCAGCGCCACCauaGCCa -3'
miRNA:   3'- -GACGauaACGA---C-GGUUGCGGUGG---CGG- -5'
1940 5' -55.1 NC_001347.2 + 31112 0.73 0.679968
Target:  5'- gUGCUccAUUGCcgGCCGGCGUCcagGCUGCCc -3'
miRNA:   3'- gACGA--UAACGa-CGGUUGCGG---UGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 35324 0.77 0.481926
Target:  5'- gUGCUAUgGCUGCuCAAUGCCACCa-- -3'
miRNA:   3'- gACGAUAaCGACG-GUUGCGGUGGcgg -5'
1940 5' -55.1 NC_001347.2 + 36414 0.71 0.776787
Target:  5'- gUGCUGUuuuccgUGUUGCCGACGgCGgCGCg -3'
miRNA:   3'- gACGAUA------ACGACGGUUGCgGUgGCGg -5'
1940 5' -55.1 NC_001347.2 + 37068 0.67 0.940471
Target:  5'- gUGCUG--GCgGCCGugGCCugUgGCCc -3'
miRNA:   3'- gACGAUaaCGaCGGUugCGGugG-CGG- -5'
1940 5' -55.1 NC_001347.2 + 38247 0.73 0.699917
Target:  5'- -cGCUGcUGCUGCC-GCGuCCGCC-CCg -3'
miRNA:   3'- gaCGAUaACGACGGuUGC-GGUGGcGG- -5'
1940 5' -55.1 NC_001347.2 + 38417 0.66 0.953286
Target:  5'- -cGCUcgccGCUGgCGGCGacgucguccCCGCCGCCg -3'
miRNA:   3'- gaCGAuaa-CGACgGUUGC---------GGUGGCGG- -5'
1940 5' -55.1 NC_001347.2 + 38533 0.69 0.875738
Target:  5'- -cGCUGguucaGgUGCCGACGCacgGCCGUCa -3'
miRNA:   3'- gaCGAUaa---CgACGGUUGCGg--UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.