miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19401 5' -56 NC_004685.1 + 15991 0.66 0.797551
Target:  5'- cCGGUUCCGCG-----UCGuccCGCCGUGg -3'
miRNA:   3'- -GCCAAGGCGCugaugAGCu--GUGGCGC- -5'
19401 5' -56 NC_004685.1 + 2321 0.66 0.797551
Target:  5'- gCGGaUgCGCGACcAgUUGACGCgGCGc -3'
miRNA:   3'- -GCCaAgGCGCUGaUgAGCUGUGgCGC- -5'
19401 5' -56 NC_004685.1 + 30734 0.66 0.797551
Target:  5'- -uGUUCCGCauGGCgugUUCGACAuuCCGCGg -3'
miRNA:   3'- gcCAAGGCG--CUGau-GAGCUGU--GGCGC- -5'
19401 5' -56 NC_004685.1 + 44943 0.66 0.797551
Target:  5'- uGGUgcUCgGCGGCUACUCGcAgGgUGCa -3'
miRNA:   3'- gCCA--AGgCGCUGAUGAGC-UgUgGCGc -5'
19401 5' -56 NC_004685.1 + 66148 0.66 0.788146
Target:  5'- aCGGUcgccgaucgcgUCgGCGuGCUGCUUGGCgugaugGCCGCa -3'
miRNA:   3'- -GCCA-----------AGgCGC-UGAUGAGCUG------UGGCGc -5'
19401 5' -56 NC_004685.1 + 49966 0.66 0.788146
Target:  5'- uGaGUggCGCGACUACcugUCGGCcgacccugaggGCCGCGa -3'
miRNA:   3'- gC-CAagGCGCUGAUG---AGCUG-----------UGGCGC- -5'
19401 5' -56 NC_004685.1 + 30391 0.66 0.785295
Target:  5'- cCGGgaaCCGCGcCggagGCcagguugucguaggUCGGCGCCGCGc -3'
miRNA:   3'- -GCCaa-GGCGCuGa---UG--------------AGCUGUGGCGC- -5'
19401 5' -56 NC_004685.1 + 5960 0.66 0.784342
Target:  5'- aGGUUcucgaaaCCGCGAgcguaaaggugaacCUGacCUCGAUACUGCGg -3'
miRNA:   3'- gCCAA-------GGCGCU--------------GAU--GAGCUGUGGCGC- -5'
19401 5' -56 NC_004685.1 + 38388 0.66 0.778591
Target:  5'- gCGGcgUUCGCG-UUGCUCGGCAa-GCGg -3'
miRNA:   3'- -GCCa-AGGCGCuGAUGAGCUGUggCGC- -5'
19401 5' -56 NC_004685.1 + 52554 0.66 0.778591
Target:  5'- cCGGaacUCCaGCGGCcGCUCGuuGCCGuCGg -3'
miRNA:   3'- -GCCa--AGG-CGCUGaUGAGCugUGGC-GC- -5'
19401 5' -56 NC_004685.1 + 21583 0.66 0.776662
Target:  5'- uGGgcagCgGCGACgccuaccuguuCUCGAcCGCCGCGa -3'
miRNA:   3'- gCCaa--GgCGCUGau---------GAGCU-GUGGCGC- -5'
19401 5' -56 NC_004685.1 + 58707 0.66 0.772789
Target:  5'- uCGGUggCCGCGGCgacACUgcgcagcaacgggcgCGACGCCGa- -3'
miRNA:   3'- -GCCAa-GGCGCUGa--UGA---------------GCUGUGGCgc -5'
19401 5' -56 NC_004685.1 + 22870 0.66 0.768894
Target:  5'- uCGGcgCC-CGGCUGC-CGACaucgGCCGCu -3'
miRNA:   3'- -GCCaaGGcGCUGAUGaGCUG----UGGCGc -5'
19401 5' -56 NC_004685.1 + 15922 0.66 0.768894
Target:  5'- -uGUUCUGgGACUuccaGCUCGGCGaaGCGu -3'
miRNA:   3'- gcCAAGGCgCUGA----UGAGCUGUggCGC- -5'
19401 5' -56 NC_004685.1 + 518 0.66 0.763012
Target:  5'- ----aCCGCGGCUgaugcuuagccccgaGCUCGcCGCCGCc -3'
miRNA:   3'- gccaaGGCGCUGA---------------UGAGCuGUGGCGc -5'
19401 5' -56 NC_004685.1 + 39384 0.66 0.759066
Target:  5'- cCGGggCCGCGACcaacggGCgggcCGAaCACgGCGa -3'
miRNA:   3'- -GCCaaGGCGCUGa-----UGa---GCU-GUGgCGC- -5'
19401 5' -56 NC_004685.1 + 58816 0.66 0.759066
Target:  5'- ---gUCgGC-ACUGCcCGACACCGCGc -3'
miRNA:   3'- gccaAGgCGcUGAUGaGCUGUGGCGC- -5'
19401 5' -56 NC_004685.1 + 67030 0.66 0.749118
Target:  5'- aCGGgcugcCCGCGACcaacGCUgaCGugACCGUGa -3'
miRNA:   3'- -GCCaa---GGCGCUGa---UGA--GCugUGGCGC- -5'
19401 5' -56 NC_004685.1 + 55715 0.66 0.749118
Target:  5'- cCGGUguaugugaUCC-CGGCUgaGCUgGACACgGCGa -3'
miRNA:   3'- -GCCA--------AGGcGCUGA--UGAgCUGUGgCGC- -5'
19401 5' -56 NC_004685.1 + 67104 0.66 0.749118
Target:  5'- aGGcugUCguUGCGAC-GCUCGGCGCgGCGc -3'
miRNA:   3'- gCCa--AG--GCGCUGaUGAGCUGUGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.