miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19412 5' -58.5 NC_004685.1 + 9763 0.66 0.639117
Target:  5'- cGAACAUCaCCgaGAUGAccgGAUcGGGGGUGg -3'
miRNA:   3'- -CUUGUGG-GGg-CUGCUa--CUA-CCCCCGC- -5'
19412 5' -58.5 NC_004685.1 + 68657 0.66 0.639117
Target:  5'- cGAACA-CCCCGACGc--AUcGGGGCGc -3'
miRNA:   3'- -CUUGUgGGGGCUGCuacUAcCCCCGC- -5'
19412 5' -58.5 NC_004685.1 + 631 0.66 0.618019
Target:  5'- cGACACCCgCG-CGcUGcUGGcGGGCGa -3'
miRNA:   3'- cUUGUGGGgGCuGCuACuACC-CCCGC- -5'
19412 5' -58.5 NC_004685.1 + 40081 0.67 0.576022
Target:  5'- uGACACCCUCGAUcaguucGUGucGGGGGUGg -3'
miRNA:   3'- cUUGUGGGGGCUGc-----UACuaCCCCCGC- -5'
19412 5' -58.5 NC_004685.1 + 48729 0.67 0.555248
Target:  5'- cGAACACCCggCCGGUGAUGA-GGuuGGGCu -3'
miRNA:   3'- -CUUGUGGG--GGCUGCUACUaCC--CCCGc -5'
19412 5' -58.5 NC_004685.1 + 18668 0.68 0.524524
Target:  5'- -uGCugCCgCgGugGcccuUGAUGGGGGUGg -3'
miRNA:   3'- cuUGugGG-GgCugCu---ACUACCCCCGC- -5'
19412 5' -58.5 NC_004685.1 + 13885 0.68 0.518454
Target:  5'- cGAAC-CCgCCGACGGUG-UGggccagcacgccaucGGGGCGg -3'
miRNA:   3'- -CUUGuGGgGGCUGCUACuAC---------------CCCCGC- -5'
19412 5' -58.5 NC_004685.1 + 41575 0.69 0.455675
Target:  5'- uGGGCGCCCCC-ACGGUGGaGGucGGCGc -3'
miRNA:   3'- -CUUGUGGGGGcUGCUACUaCCc-CCGC- -5'
19412 5' -58.5 NC_004685.1 + 71 0.69 0.427685
Target:  5'- ---aACCCCCGGCaucgGggGGGGGUGc -3'
miRNA:   3'- cuugUGGGGGCUGcua-CuaCCCCCGC- -5'
19412 5' -58.5 NC_004685.1 + 45708 0.7 0.389401
Target:  5'- --uCACCCCCGAgGAacggucucaggugcUGAacaccugggcUGGGGGUGg -3'
miRNA:   3'- cuuGUGGGGGCUgCU--------------ACU----------ACCCCCGC- -5'
19412 5' -58.5 NC_004685.1 + 47182 0.71 0.358308
Target:  5'- cGGugACCacggCGACGAUGAUGGuGGCGa -3'
miRNA:   3'- -CUugUGGgg--GCUGCUACUACCcCCGC- -5'
19412 5' -58.5 NC_004685.1 + 13269 0.72 0.304378
Target:  5'- cGACgGCCCCCcACGAUGucauaggGGGGGCu -3'
miRNA:   3'- cUUG-UGGGGGcUGCUACua-----CCCCCGc -5'
19412 5' -58.5 NC_004685.1 + 58093 0.72 0.29016
Target:  5'- --cCGCCCUCGGCGAUG-UGaGGGCGu -3'
miRNA:   3'- cuuGUGGGGGCUGCUACuACcCCCGC- -5'
19412 5' -58.5 NC_004685.1 + 166 0.73 0.263296
Target:  5'- cGGCACCCCCcccCGAUGccGGGGGUu -3'
miRNA:   3'- cUUGUGGGGGcu-GCUACuaCCCCCGc -5'
19412 5' -58.5 NC_004685.1 + 65357 0.74 0.221189
Target:  5'- -cACACCCCCGACaagGGUG-UGGGuuGGCGg -3'
miRNA:   3'- cuUGUGGGGGCUG---CUACuACCC--CCGC- -5'
19412 5' -58.5 NC_004685.1 + 45439 0.79 0.10594
Target:  5'- cGAAUACCUCCGGuccUGAcaUGAUGGGGGCa -3'
miRNA:   3'- -CUUGUGGGGGCU---GCU--ACUACCCCCGc -5'
19412 5' -58.5 NC_004685.1 + 9188 1.09 0.000719
Target:  5'- cGAACACCCCCGACGAUGAUGGGGGCGa -3'
miRNA:   3'- -CUUGUGGGGGCUGCUACUACCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.