miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19415 3' -66.1 NC_004685.1 + 59972 0.66 0.294582
Target:  5'- gCUGGCGcugagggcacGCUGcGCCGGguUCUGGaucaucaGCCGa -3'
miRNA:   3'- -GACCGC----------CGAC-CGGCC--AGACCgg-----CGGC- -5'
19415 3' -66.1 NC_004685.1 + 64189 0.66 0.293905
Target:  5'- -cGGCGGCgaUGGCCGccaccauGUC-GGCCacgaaccgcGCCGg -3'
miRNA:   3'- gaCCGCCG--ACCGGC-------CAGaCCGG---------CGGC- -5'
19415 3' -66.1 NC_004685.1 + 47162 0.66 0.288538
Target:  5'- aUGGUGGCgaccGCCGGggugaucccggugggCUGcGUCGCCGc -3'
miRNA:   3'- gACCGCCGac--CGGCCa--------------GAC-CGGCGGC- -5'
19415 3' -66.1 NC_004685.1 + 36784 0.66 0.287873
Target:  5'- aUGGUGGCaGGCCaGUacauGUCGCCGa -3'
miRNA:   3'- gACCGCCGaCCGGcCAgac-CGGCGGC- -5'
19415 3' -66.1 NC_004685.1 + 43913 0.66 0.274817
Target:  5'- -gGGCGaGC-GGCCcgcgcaGGUCggGGCgGCCGa -3'
miRNA:   3'- gaCCGC-CGaCCGG------CCAGa-CCGgCGGC- -5'
19415 3' -66.1 NC_004685.1 + 48328 0.66 0.274177
Target:  5'- -aGGCGGCUacuggcGGCCGGUgUucgacacGGgCGUCGa -3'
miRNA:   3'- gaCCGCCGA------CCGGCCAgA-------CCgGCGGC- -5'
19415 3' -66.1 NC_004685.1 + 30047 0.66 0.269098
Target:  5'- -cGGCGGUggugucggcaucgcgGGCCGGUUcGGCaaccuguuccgCGCCGc -3'
miRNA:   3'- gaCCGCCGa--------------CCGGCCAGaCCG-----------GCGGC- -5'
19415 3' -66.1 NC_004685.1 + 50047 0.66 0.268469
Target:  5'- gUGGCGGCUGGacggccCCGaGUaCUGggaGCUGCUGg -3'
miRNA:   3'- gACCGCCGACC------GGC-CA-GAC---CGGCGGC- -5'
19415 3' -66.1 NC_004685.1 + 56465 0.66 0.268469
Target:  5'- gCUGGUcaaGCUGGCUGaG-CUGGCCcgcgugGCCGa -3'
miRNA:   3'- -GACCGc--CGACCGGC-CaGACCGG------CGGC- -5'
19415 3' -66.1 NC_004685.1 + 8670 0.66 0.265963
Target:  5'- -cGGUGuGCUGGCC-GUCgauucaccccgagGGCCGCgCGu -3'
miRNA:   3'- gaCCGC-CGACCGGcCAGa------------CCGGCG-GC- -5'
19415 3' -66.1 NC_004685.1 + 69227 0.66 0.26224
Target:  5'- aUGGUGGC-GGCCacgGGUaaggGGCgCGCCa -3'
miRNA:   3'- gACCGCCGaCCGG---CCAga--CCG-GCGGc -5'
19415 3' -66.1 NC_004685.1 + 44687 0.66 0.26224
Target:  5'- cCUGgaGCGGCcccccgGGCCGGacacCcGGCCGCUGu -3'
miRNA:   3'- -GAC--CGCCGa-----CCGGCCa---GaCCGGCGGC- -5'
19415 3' -66.1 NC_004685.1 + 30499 0.67 0.256129
Target:  5'- uUGGCGGUcauggUGGCCGGguUCUuGCCcauguacuucaGCCGa -3'
miRNA:   3'- gACCGCCG-----ACCGGCC--AGAcCGG-----------CGGC- -5'
19415 3' -66.1 NC_004685.1 + 22415 0.67 0.256129
Target:  5'- aCUGGCGGUUGG-CGGU---GCUGUCGa -3'
miRNA:   3'- -GACCGCCGACCgGCCAgacCGGCGGC- -5'
19415 3' -66.1 NC_004685.1 + 3524 0.67 0.24895
Target:  5'- gCUGuGCGGCccgugcaaucagGGCauCGGccgCUGGUCGCCGg -3'
miRNA:   3'- -GAC-CGCCGa-----------CCG--GCCa--GACCGGCGGC- -5'
19415 3' -66.1 NC_004685.1 + 57201 0.67 0.244257
Target:  5'- uUGGCGGCaccGGCCGcGUCcacGGUCgGCCc -3'
miRNA:   3'- gACCGCCGa--CCGGC-CAGa--CCGG-CGGc -5'
19415 3' -66.1 NC_004685.1 + 8482 0.67 0.238494
Target:  5'- gCUGGCcgaGGCUGagcGCCGGUggGGuCCGCUa -3'
miRNA:   3'- -GACCG---CCGAC---CGGCCAgaCC-GGCGGc -5'
19415 3' -66.1 NC_004685.1 + 12522 0.67 0.238494
Target:  5'- -cGGCGGC-GGgCGGUCacaGCCGCUc -3'
miRNA:   3'- gaCCGCCGaCCgGCCAGac-CGGCGGc -5'
19415 3' -66.1 NC_004685.1 + 68549 0.67 0.232846
Target:  5'- aCUGGCGGCc-GCCcaucGGaCUGGCgGCCc -3'
miRNA:   3'- -GACCGCCGacCGG----CCaGACCGgCGGc -5'
19415 3' -66.1 NC_004685.1 + 42753 0.67 0.232287
Target:  5'- --aGCGGCUGauCCGGUgccugccUUGGCCGCCc -3'
miRNA:   3'- gacCGCCGACc-GGCCA-------GACCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.