miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19416 5' -58.3 NC_004685.1 + 696 0.66 0.593524
Target:  5'- -cGGCAGCGUGggugGCGgCGGgagGGUGaUCc -3'
miRNA:   3'- aaCCGUCGCGCa---CGC-GCC---UCACaAGu -5'
19416 5' -58.3 NC_004685.1 + 44071 0.66 0.593524
Target:  5'- -cGGCAG-GUcuuUGCGCGGGGUGggCc -3'
miRNA:   3'- aaCCGUCgCGc--ACGCGCCUCACaaGu -5'
19416 5' -58.3 NC_004685.1 + 54960 0.66 0.560371
Target:  5'- gUUGGCGGCgGCGgcUGCGCagcugccGGAGgGUUCc -3'
miRNA:   3'- -AACCGUCG-CGC--ACGCG-------CCUCaCAAGu -5'
19416 5' -58.3 NC_004685.1 + 30488 0.67 0.529835
Target:  5'- -aGGCGGCGCGUggaGCGUuccGGGGUccUUCAg -3'
miRNA:   3'- aaCCGUCGCGCA---CGCG---CCUCAc-AAGU- -5'
19416 5' -58.3 NC_004685.1 + 12952 0.67 0.509134
Target:  5'- -gGGCGGCGagaGcUGCgGCGGcaacagGGUGUUCAc -3'
miRNA:   3'- aaCCGUCGCg--C-ACG-CGCC------UCACAAGU- -5'
19416 5' -58.3 NC_004685.1 + 24038 0.67 0.478748
Target:  5'- -cGGCAGCGgGUcGCcgggGCGGcgcGUGUUCGc -3'
miRNA:   3'- aaCCGUCGCgCA-CG----CGCCu--CACAAGU- -5'
19416 5' -58.3 NC_004685.1 + 25158 0.68 0.468817
Target:  5'- -aGGCAGC-CGgggcuuucuCGUGGGGUGUUCGg -3'
miRNA:   3'- aaCCGUCGcGCac-------GCGCCUCACAAGU- -5'
19416 5' -58.3 NC_004685.1 + 68547 0.68 0.458993
Target:  5'- -cGGCcaguccgaugcgGGCGCcccgaUGCGuCGGGGUGUUCGg -3'
miRNA:   3'- aaCCG------------UCGCGc----ACGC-GCCUCACAAGU- -5'
19416 5' -58.3 NC_004685.1 + 51667 0.69 0.392625
Target:  5'- -cGGCAGCGCcucgucgGUGCccGCGGAGg--UCAg -3'
miRNA:   3'- aaCCGUCGCG-------CACG--CGCCUCacaAGU- -5'
19416 5' -58.3 NC_004685.1 + 7527 0.7 0.326511
Target:  5'- -cGGCGGCGgGgGCGgGGAGUGa--- -3'
miRNA:   3'- aaCCGUCGCgCaCGCgCCUCACaagu -5'
19416 5' -58.3 NC_004685.1 + 10736 1.06 0.000849
Target:  5'- aUUGGCAGCGCGUGCGCGGAGUGUUCAg -3'
miRNA:   3'- -AACCGUCGCGCACGCGCCUCACAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.