Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 19419 | 3' | -57.4 | NC_004685.1 | + | 59216 | 0.66 | 0.6552 |
|
Target: 5'- -gUGGGcgGGCuGGaCGUGUucaaGGAGUGGg -3' miRNA: 3'- ugACCCuaCUGcCC-GUACA----CCUCGCC- -5' |
|||||||
| 19419 | 3' | -57.4 | NC_004685.1 | + | 53252 | 0.66 | 0.643494 |
|
Target: 5'- cGCUGGGGgcgcaaccGGCuGGGCGUgcucgacGUGGAGCc- -3' miRNA: 3'- -UGACCCUa-------CUG-CCCGUA-------CACCUCGcc -5' |
|||||||
| 19419 | 3' | -57.4 | NC_004685.1 | + | 61451 | 0.67 | 0.600914 |
|
Target: 5'- cGCUGGaGAaGACGGGUGUccaugcgcaggugGUGGAcaccgacaGCGGg -3' miRNA: 3'- -UGACC-CUaCUGCCCGUA-------------CACCU--------CGCC- -5' |
|||||||
| 19419 | 3' | -57.4 | NC_004685.1 | + | 50025 | 0.67 | 0.59137 |
|
Target: 5'- uACUGGGAgcUGcUGGGCAgagUGUGGu-CGGa -3' miRNA: 3'- -UGACCCU--ACuGCCCGU---ACACCucGCC- -5' |
|||||||
| 19419 | 3' | -57.4 | NC_004685.1 | + | 3359 | 0.68 | 0.518436 |
|
Target: 5'- gACcGGGcgGGCGGGCggGUcGAGuCGGu -3' miRNA: 3'- -UGaCCCuaCUGCCCGuaCAcCUC-GCC- -5' |
|||||||
| 19419 | 3' | -57.4 | NC_004685.1 | + | 10476 | 0.68 | 0.518436 |
|
Target: 5'- --cGGGAccgcggcauguUGcCGGGUGUGcUGGAGUGGg -3' miRNA: 3'- ugaCCCU-----------ACuGCCCGUAC-ACCUCGCC- -5' |
|||||||
| 19419 | 3' | -57.4 | NC_004685.1 | + | 60510 | 0.72 | 0.351993 |
|
Target: 5'- cGCUGGG-UGuCGGGa---UGGAGCGGg -3' miRNA: 3'- -UGACCCuACuGCCCguacACCUCGCC- -5' |
|||||||
| 19419 | 3' | -57.4 | NC_004685.1 | + | 12408 | 1.09 | 0.000882 |
|
Target: 5'- cACUGGGAUGACGGGCAUGUGGAGCGGc -3' miRNA: 3'- -UGACCCUACUGCCCGUACACCUCGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home