miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19419 5' -65.8 NC_004685.1 + 6797 0.66 0.311207
Target:  5'- cCCCGCCcCCG-GUGaCCGG-CGGCUa -3'
miRNA:   3'- cGGGCGGcGGCuCGCgGGCCaGUCGA- -5'
19419 5' -65.8 NC_004685.1 + 23515 0.66 0.310503
Target:  5'- cGCCCGaCG-CGGGCGacCCCGGUCAccccuacGCg -3'
miRNA:   3'- -CGGGCgGCgGCUCGC--GGGCCAGU-------CGa -5'
19419 5' -65.8 NC_004685.1 + 41565 0.66 0.304216
Target:  5'- -aCgGCUGCggUGGGCGCCCccacgguggaGGUCGGCg -3'
miRNA:   3'- cgGgCGGCG--GCUCGCGGG----------CCAGUCGa -5'
19419 5' -65.8 NC_004685.1 + 61588 0.66 0.304216
Target:  5'- cGCgaCGCCGCCGGGCGgUCGGcCGu-- -3'
miRNA:   3'- -CGg-GCGGCGGCUCGCgGGCCaGUcga -5'
19419 5' -65.8 NC_004685.1 + 62600 0.66 0.297346
Target:  5'- uGUCCgaGCCGUCGGGagGCCCGGccgUGGCg -3'
miRNA:   3'- -CGGG--CGGCGGCUCg-CGGGCCa--GUCGa -5'
19419 5' -65.8 NC_004685.1 + 1896 0.66 0.297346
Target:  5'- aGgCCGCgGCCGuGCccgcugcgGCCgCGGUUGGCg -3'
miRNA:   3'- -CgGGCGgCGGCuCG--------CGG-GCCAGUCGa -5'
19419 5' -65.8 NC_004685.1 + 53870 0.66 0.290597
Target:  5'- gGCuuGCCGuCCGcGgGUCaguGGUCAGCg -3'
miRNA:   3'- -CGggCGGC-GGCuCgCGGg--CCAGUCGa -5'
19419 5' -65.8 NC_004685.1 + 12087 0.66 0.290597
Target:  5'- gGCCUGgccaagcgcaCCGCCGAGUGCCCccacggauGGaaGGCg -3'
miRNA:   3'- -CGGGC----------GGCGGCUCGCGGG--------CCagUCGa -5'
19419 5' -65.8 NC_004685.1 + 32346 0.66 0.290597
Target:  5'- aCCgGCgGCCGAcGCGgCCGcGuUCAGCg -3'
miRNA:   3'- cGGgCGgCGGCU-CGCgGGC-C-AGUCGa -5'
19419 5' -65.8 NC_004685.1 + 22364 0.66 0.290597
Target:  5'- gGCCCGcCCGCCGAccaGCGCaCCuuGGaCAGg- -3'
miRNA:   3'- -CGGGC-GGCGGCU---CGCG-GG--CCaGUCga -5'
19419 5' -65.8 NC_004685.1 + 57278 0.66 0.27746
Target:  5'- gGCCCGCaccugGUCGAGCuUuuGGUaCAGCg -3'
miRNA:   3'- -CGGGCGg----CGGCUCGcGggCCA-GUCGa -5'
19419 5' -65.8 NC_004685.1 + 29980 0.66 0.275531
Target:  5'- aGCUgGCCGCCGcggucgacgccgguGGCGaCCUGaUCGGCa -3'
miRNA:   3'- -CGGgCGGCGGC--------------UCGC-GGGCcAGUCGa -5'
19419 5' -65.8 NC_004685.1 + 36702 0.67 0.271071
Target:  5'- uGCCCGCgG-CGAGCGCaCCcgccaGGUCcucGGCg -3'
miRNA:   3'- -CGGGCGgCgGCUCGCG-GG-----CCAG---UCGa -5'
19419 5' -65.8 NC_004685.1 + 59467 0.67 0.271071
Target:  5'- aGCUCGCCGuuGGacaGCUCGGgCGGCg -3'
miRNA:   3'- -CGGGCGGCggCUcg-CGGGCCaGUCGa -5'
19419 5' -65.8 NC_004685.1 + 32264 0.67 0.271071
Target:  5'- cGUCgGCCGCCGguGGCGCgggCGGUCcugguGGCg -3'
miRNA:   3'- -CGGgCGGCGGC--UCGCGg--GCCAG-----UCGa -5'
19419 5' -65.8 NC_004685.1 + 54689 0.67 0.271071
Target:  5'- uGCUCGgUGCCGAGgucCGCUCGgGUguGCUg -3'
miRNA:   3'- -CGGGCgGCGGCUC---GCGGGC-CAguCGA- -5'
19419 5' -65.8 NC_004685.1 + 7448 0.67 0.270439
Target:  5'- cCCCGCCGCCGuGGCugacaagucgaauGCCCaGGUagaGGUg -3'
miRNA:   3'- cGGGCGGCGGC-UCG-------------CGGG-CCAg--UCGa -5'
19419 5' -65.8 NC_004685.1 + 23349 0.67 0.264801
Target:  5'- aGUCUGagGCCGAGgaGCCCGaGUCGGUg -3'
miRNA:   3'- -CGGGCggCGGCUCg-CGGGC-CAGUCGa -5'
19419 5' -65.8 NC_004685.1 + 23625 0.67 0.25865
Target:  5'- gGCCCGUCGCguaggggugacCGGGguCGCCCGcGUCgGGCg -3'
miRNA:   3'- -CGGGCGGCG-----------GCUC--GCGGGC-CAG-UCGa -5'
19419 5' -65.8 NC_004685.1 + 26423 0.67 0.25865
Target:  5'- cGCCuCGUCGCUGAGCauCCCgaGGUCGGg- -3'
miRNA:   3'- -CGG-GCGGCGGCUCGc-GGG--CCAGUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.