miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19420 3' -60.7 NC_004685.1 + 38720 0.66 0.501891
Target:  5'- cCGCugcccugucgauGAGCCgaucGCCGCUGAGGCgGGc -3'
miRNA:   3'- -GCG------------UUCGGacu-CGGCGGCUUCGgCCa -5'
19420 3' -60.7 NC_004685.1 + 62606 0.66 0.501891
Target:  5'- uCGCGGuGUCcGAGCCGUCGGgaGGcCCGGc -3'
miRNA:   3'- -GCGUU-CGGaCUCGGCGGCU--UC-GGCCa -5'
19420 3' -60.7 NC_004685.1 + 26157 0.66 0.501891
Target:  5'- -uCAAGUCUGAGCCaggGCCGAcAG-CGGUc -3'
miRNA:   3'- gcGUUCGGACUCGG---CGGCU-UCgGCCA- -5'
19420 3' -60.7 NC_004685.1 + 32575 0.66 0.501891
Target:  5'- uGCcuGCCagguUGGGCagCGCCGggGCCGc- -3'
miRNA:   3'- gCGuuCGG----ACUCG--GCGGCuuCGGCca -5'
19420 3' -60.7 NC_004685.1 + 31158 0.66 0.501891
Target:  5'- uCGCGAcGCUc--GCCGCCGc-GCCGGUc -3'
miRNA:   3'- -GCGUU-CGGacuCGGCGGCuuCGGCCA- -5'
19420 3' -60.7 NC_004685.1 + 9227 0.66 0.501891
Target:  5'- aGgAGGCCagcgcggauUGGGCCagcGCCGggGCCGc- -3'
miRNA:   3'- gCgUUCGG---------ACUCGG---CGGCuuCGGCca -5'
19420 3' -60.7 NC_004685.1 + 29973 0.66 0.492006
Target:  5'- gCGCugAAGCU--GGCCGCCGcggucgacGCCGGUg -3'
miRNA:   3'- -GCG--UUCGGacUCGGCGGCuu------CGGCCA- -5'
19420 3' -60.7 NC_004685.1 + 59910 0.66 0.492006
Target:  5'- aGCAGGaCCUGuucaccGCCaucGCCaAGGCCGGg -3'
miRNA:   3'- gCGUUC-GGACu-----CGG---CGGcUUCGGCCa -5'
19420 3' -60.7 NC_004685.1 + 56962 0.66 0.492006
Target:  5'- gGCGGGCCgu-GCCGUCGAcaAGaaGGUu -3'
miRNA:   3'- gCGUUCGGacuCGGCGGCU--UCggCCA- -5'
19420 3' -60.7 NC_004685.1 + 19414 0.66 0.491022
Target:  5'- gGcCAAGCCUGgugucccgcuacaAGCgCGCCGAAcGCCGu- -3'
miRNA:   3'- gC-GUUCGGAC-------------UCG-GCGGCUU-CGGCca -5'
19420 3' -60.7 NC_004685.1 + 12195 0.66 0.486118
Target:  5'- gGCAGGCCac-GCCGCCGGacuacuucaaggacaAGCUGcGUg -3'
miRNA:   3'- gCGUUCGGacuCGGCGGCU---------------UCGGC-CA- -5'
19420 3' -60.7 NC_004685.1 + 37817 0.66 0.486118
Target:  5'- aGCAGcGCCUucaucGuGCCGUCGGcgacgaccuucaccgAGCCGGUc -3'
miRNA:   3'- gCGUU-CGGA-----CuCGGCGGCU---------------UCGGCCA- -5'
19420 3' -60.7 NC_004685.1 + 31553 0.66 0.482211
Target:  5'- aCGCcuuGCCgcuGCUGCCGuaaccGCCGGUg -3'
miRNA:   3'- -GCGuu-CGGacuCGGCGGCuu---CGGCCA- -5'
19420 3' -60.7 NC_004685.1 + 59078 0.66 0.482211
Target:  5'- uGcCAGGCgUUGGG-CGCCGAguggaacuGGCCGGUg -3'
miRNA:   3'- gC-GUUCG-GACUCgGCGGCU--------UCGGCCA- -5'
19420 3' -60.7 NC_004685.1 + 14255 0.66 0.482211
Target:  5'- gCGCgAAGCC-GAGaCCGgCGAGGCCa-- -3'
miRNA:   3'- -GCG-UUCGGaCUC-GGCgGCUUCGGcca -5'
19420 3' -60.7 NC_004685.1 + 8088 0.66 0.479291
Target:  5'- gCGCAucugauGGCCgGGucgguggucaacgcGCUgGCCGAGGCCGGg -3'
miRNA:   3'- -GCGU------UCGGaCU--------------CGG-CGGCUUCGGCCa -5'
19420 3' -60.7 NC_004685.1 + 54704 0.66 0.472512
Target:  5'- aGguGGCCgggGAGCUGCuCGguGCCGa- -3'
miRNA:   3'- gCguUCGGa--CUCGGCG-GCuuCGGCca -5'
19420 3' -60.7 NC_004685.1 + 28885 0.66 0.472512
Target:  5'- cCGCAAgGCgCUGAccgGCCGCCGGAaCCaGGa -3'
miRNA:   3'- -GCGUU-CG-GACU---CGGCGGCUUcGG-CCa -5'
19420 3' -60.7 NC_004685.1 + 19936 0.66 0.469621
Target:  5'- ----uGCCgacGAGCCGCCcaccgucaugguugGggGCCGGg -3'
miRNA:   3'- gcguuCGGa--CUCGGCGG--------------CuuCGGCCa -5'
19420 3' -60.7 NC_004685.1 + 6949 0.66 0.46866
Target:  5'- gGCuGAGCCgGGGCacccggggucacgGCgGGAGCCGGUg -3'
miRNA:   3'- gCG-UUCGGaCUCGg------------CGgCUUCGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.