miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19420 5' -51.9 NC_004685.1 + 387 0.66 0.927647
Target:  5'- cGGGCaUCggguUCGACGaCGACCC-CGAa -3'
miRNA:   3'- aCUCGaAGa---AGCUGUgGUUGGGuGCU- -5'
19420 5' -51.9 NC_004685.1 + 54722 0.66 0.921775
Target:  5'- --cGCUUCagcagCGACGCCAcgaACUCACGc -3'
miRNA:   3'- acuCGAAGaa---GCUGUGGU---UGGGUGCu -5'
19420 5' -51.9 NC_004685.1 + 57663 0.66 0.921775
Target:  5'- cGAGCUUCacgUCGGCGuuGgcguCCgGCGAg -3'
miRNA:   3'- aCUCGAAGa--AGCUGUggUu---GGgUGCU- -5'
19420 5' -51.9 NC_004685.1 + 45319 0.66 0.921775
Target:  5'- cGAGCUgucccaGAUGCCGAuCCCGCGc -3'
miRNA:   3'- aCUCGAagaag-CUGUGGUU-GGGUGCu -5'
19420 5' -51.9 NC_004685.1 + 43418 0.66 0.921775
Target:  5'- -aGGCUUCUUCGACAaguucgaCGugUgGCGGc -3'
miRNA:   3'- acUCGAAGAAGCUGUg------GUugGgUGCU- -5'
19420 5' -51.9 NC_004685.1 + 35750 0.66 0.921775
Target:  5'- uUGAGCcaCUUCgGACugCGACCgC-CGAu -3'
miRNA:   3'- -ACUCGaaGAAG-CUGugGUUGG-GuGCU- -5'
19420 5' -51.9 NC_004685.1 + 4192 0.66 0.915622
Target:  5'- aGGGCUaugUCGGCAUCAGCggCCACa- -3'
miRNA:   3'- aCUCGAagaAGCUGUGGUUG--GGUGcu -5'
19420 5' -51.9 NC_004685.1 + 10203 0.66 0.915622
Target:  5'- cGAGCgcguUCUcgucgccgcucaUCGACugC-ACCCGCGc -3'
miRNA:   3'- aCUCGa---AGA------------AGCUGugGuUGGGUGCu -5'
19420 5' -51.9 NC_004685.1 + 67806 0.66 0.915622
Target:  5'- cGGGUgUUCggaaacCGaACACCuGCCCACGAa -3'
miRNA:   3'- aCUCG-AAGaa----GC-UGUGGuUGGGUGCU- -5'
19420 5' -51.9 NC_004685.1 + 6816 0.66 0.915622
Target:  5'- -cGGCUaCUUCG-CACCG-CCCGCa- -3'
miRNA:   3'- acUCGAaGAAGCuGUGGUuGGGUGcu -5'
19420 5' -51.9 NC_004685.1 + 36802 0.66 0.915622
Target:  5'- aGGGCUggugcgucaUCacCGGCACCGGCCCcaACGu -3'
miRNA:   3'- aCUCGA---------AGaaGCUGUGGUUGGG--UGCu -5'
19420 5' -51.9 NC_004685.1 + 54227 0.66 0.914357
Target:  5'- gGAGCcgauaggcCGAgGCCGACCCAcCGAa -3'
miRNA:   3'- aCUCGaagaa---GCUgUGGUUGGGU-GCU- -5'
19420 5' -51.9 NC_004685.1 + 24792 0.66 0.909189
Target:  5'- cGAGaa-CUUCGGCAUCGgcaaGCCCGuCGAc -3'
miRNA:   3'- aCUCgaaGAAGCUGUGGU----UGGGU-GCU- -5'
19420 5' -51.9 NC_004685.1 + 10090 0.66 0.909189
Target:  5'- gUGAGCaUCggCGACAgggugagcauCUcGCCCACGGc -3'
miRNA:   3'- -ACUCGaAGaaGCUGU----------GGuUGGGUGCU- -5'
19420 5' -51.9 NC_004685.1 + 30276 0.66 0.902479
Target:  5'- cGAGCgcgcuggUCgcagCGAUAgCCGGuCCCGCGAu -3'
miRNA:   3'- aCUCGa------AGaa--GCUGU-GGUU-GGGUGCU- -5'
19420 5' -51.9 NC_004685.1 + 36072 0.67 0.895495
Target:  5'- -aAGUUUCgacUCGACGCUAcGCaCCGCGAu -3'
miRNA:   3'- acUCGAAGa--AGCUGUGGU-UG-GGUGCU- -5'
19420 5' -51.9 NC_004685.1 + 29087 0.67 0.895495
Target:  5'- -cGGCggCgUUCGGCACCAucaagauggcgACCUACGGg -3'
miRNA:   3'- acUCGaaG-AAGCUGUGGU-----------UGGGUGCU- -5'
19420 5' -51.9 NC_004685.1 + 16326 0.67 0.88072
Target:  5'- cUGAGCcugCgUUCGACGCCGAgCCAg-- -3'
miRNA:   3'- -ACUCGaa-G-AAGCUGUGGUUgGGUgcu -5'
19420 5' -51.9 NC_004685.1 + 6519 0.67 0.87294
Target:  5'- cGAGCcgguggUCGACaucaagaccgGCCAGCCCAcCGAc -3'
miRNA:   3'- aCUCGaaga--AGCUG----------UGGUUGGGU-GCU- -5'
19420 5' -51.9 NC_004685.1 + 33216 0.68 0.856627
Target:  5'- -aGGCUUCUUCG-CGuCCcACgCCGCGAu -3'
miRNA:   3'- acUCGAAGAAGCuGU-GGuUG-GGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.