miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19423 3' -53.3 NC_004685.1 + 41223 0.66 0.903865
Target:  5'- gCCgacgaGUUCCUggaCGACAUCGCCa -3'
miRNA:   3'- -GGaucagUAGGGAag-GCUGUAGCGGc -5'
19423 3' -53.3 NC_004685.1 + 53533 0.66 0.890081
Target:  5'- --aGGUaGUgCCgaccgCCGACAUCGCCa -3'
miRNA:   3'- ggaUCAgUAgGGaa---GGCUGUAGCGGc -5'
19423 3' -53.3 NC_004685.1 + 42676 0.66 0.882805
Target:  5'- --gGGUCAUgUagUgCGACAUCGCCGa -3'
miRNA:   3'- ggaUCAGUAgGgaAgGCUGUAGCGGC- -5'
19423 3' -53.3 NC_004685.1 + 2574 0.66 0.87528
Target:  5'- ---uGUUGUCCUcaCCGaACGUCGCCGc -3'
miRNA:   3'- ggauCAGUAGGGaaGGC-UGUAGCGGC- -5'
19423 3' -53.3 NC_004685.1 + 8331 0.67 0.851269
Target:  5'- aCCUGGgcagCGUCgCCguagCCGACgcuguuGUCGUCGg -3'
miRNA:   3'- -GGAUCa---GUAG-GGaa--GGCUG------UAGCGGC- -5'
19423 3' -53.3 NC_004685.1 + 47150 0.67 0.84281
Target:  5'- gCCggGGUgAUCCCggugggCUG-CGUCGCCGc -3'
miRNA:   3'- -GGa-UCAgUAGGGaa----GGCuGUAGCGGC- -5'
19423 3' -53.3 NC_004685.1 + 68836 0.67 0.825257
Target:  5'- gCUGGUCAaCCCgcaUCCGcGCGccUCGUCGa -3'
miRNA:   3'- gGAUCAGUaGGGa--AGGC-UGU--AGCGGC- -5'
19423 3' -53.3 NC_004685.1 + 59881 0.68 0.797476
Target:  5'- gCCgGGUaCGUCCCgcacaCCuggGACAUCGCCa -3'
miRNA:   3'- -GGaUCA-GUAGGGaa---GG---CUGUAGCGGc -5'
19423 3' -53.3 NC_004685.1 + 58317 0.68 0.787867
Target:  5'- cCUUGGUCggCCCggCCGGCAcaGCCu -3'
miRNA:   3'- -GGAUCAGuaGGGaaGGCUGUagCGGc -5'
19423 3' -53.3 NC_004685.1 + 46798 0.69 0.75814
Target:  5'- aCCgcguuGUCGUCUCg--UGGCAUCGCCGc -3'
miRNA:   3'- -GGau---CAGUAGGGaagGCUGUAGCGGC- -5'
19423 3' -53.3 NC_004685.1 + 20939 0.69 0.73768
Target:  5'- aCCUucaggguGUCAUCCCUaUCC--CAUCGUCGg -3'
miRNA:   3'- -GGAu------CAGUAGGGA-AGGcuGUAGCGGC- -5'
19423 3' -53.3 NC_004685.1 + 1641 0.69 0.73768
Target:  5'- aCCUGuUCGgaaaCCgaacaCCGGCAUCGCCGa -3'
miRNA:   3'- -GGAUcAGUag--GGaa---GGCUGUAGCGGC- -5'
19423 3' -53.3 NC_004685.1 + 22861 0.7 0.706244
Target:  5'- aCCgagguGUCGgcgCCCggcugCCGACAUCgGCCGc -3'
miRNA:   3'- -GGau---CAGUa--GGGaa---GGCUGUAG-CGGC- -5'
19423 3' -53.3 NC_004685.1 + 1930 0.7 0.695611
Target:  5'- gCUGGUCAccgUCCCgaggUCGACAUgggaucgcggcgCGCCGg -3'
miRNA:   3'- gGAUCAGU---AGGGaa--GGCUGUA------------GCGGC- -5'
19423 3' -53.3 NC_004685.1 + 38276 0.73 0.493198
Target:  5'- gCUGGUCGaccagCUCgucUCCGGCAUCGUCGg -3'
miRNA:   3'- gGAUCAGUa----GGGa--AGGCUGUAGCGGC- -5'
19423 3' -53.3 NC_004685.1 + 25613 0.74 0.4831
Target:  5'- -aUGGUCGUCCCggCCGACcgcagGUCGCgGu -3'
miRNA:   3'- ggAUCAGUAGGGaaGGCUG-----UAGCGgC- -5'
19423 3' -53.3 NC_004685.1 + 13652 1.12 0.001619
Target:  5'- gCCUAGUCAUCCCUUCCGACAUCGCCGg -3'
miRNA:   3'- -GGAUCAGUAGGGAAGGCUGUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.