miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19423 5' -58.4 NC_004685.1 + 18993 0.66 0.611782
Target:  5'- cGCGGCGCGCgucggccacgaUGcCGAUGAGCGuCa- -3'
miRNA:   3'- aCGCCGCGUGg----------AC-GUUGCUCGCuGac -5'
19423 5' -58.4 NC_004685.1 + 64067 0.66 0.611782
Target:  5'- gGuCGGCGCagaGCCUGUGGCGGuaCGACUu -3'
miRNA:   3'- aC-GCCGCG---UGGACGUUGCUc-GCUGAc -5'
19423 5' -58.4 NC_004685.1 + 33502 0.66 0.611782
Target:  5'- gGcCGGUGCG-CUGCGGCGcGGCGAUc- -3'
miRNA:   3'- aC-GCCGCGUgGACGUUGC-UCGCUGac -5'
19423 5' -58.4 NC_004685.1 + 53358 0.66 0.611782
Target:  5'- cGCGGCGCcggugGCC-GCGGCGAuGCuGGCc- -3'
miRNA:   3'- aCGCCGCG-----UGGaCGUUGCU-CG-CUGac -5'
19423 5' -58.4 NC_004685.1 + 43059 0.66 0.611782
Target:  5'- gUGCGGCgGUGCUcGCcGCGGuCGGCUGg -3'
miRNA:   3'- -ACGCCG-CGUGGaCGuUGCUcGCUGAC- -5'
19423 5' -58.4 NC_004685.1 + 26590 0.66 0.611782
Target:  5'- aGCuGCGCGCCgGCGGCaagucGGCGGCc- -3'
miRNA:   3'- aCGcCGCGUGGaCGUUGc----UCGCUGac -5'
19423 5' -58.4 NC_004685.1 + 5933 0.66 0.610713
Target:  5'- cGCGGCGCgACgCUGCacucguuucacguGugGAGCgccGACUa -3'
miRNA:   3'- aCGCCGCG-UG-GACG-------------UugCUCG---CUGAc -5'
19423 5' -58.4 NC_004685.1 + 25901 0.66 0.610713
Target:  5'- cGCGGCGCugaccggcccaccGCCgcugcccgGCGacACGuGUGGCUGu -3'
miRNA:   3'- aCGCCGCG-------------UGGa-------CGU--UGCuCGCUGAC- -5'
19423 5' -58.4 NC_004685.1 + 2602 0.66 0.605375
Target:  5'- gGCGGCaUACCgcucggccugcucgGCAGCGA-CGGCUGc -3'
miRNA:   3'- aCGCCGcGUGGa-------------CGUUGCUcGCUGAC- -5'
19423 5' -58.4 NC_004685.1 + 66500 0.66 0.601108
Target:  5'- cGgGGCGCGCCUcccgcgccuugGCGGCcacAGCG-CUGg -3'
miRNA:   3'- aCgCCGCGUGGA-----------CGUUGc--UCGCuGAC- -5'
19423 5' -58.4 NC_004685.1 + 43147 0.66 0.601108
Target:  5'- cGCGGCgaGCACCgccGCAccgACGAGC-ACa- -3'
miRNA:   3'- aCGCCG--CGUGGa--CGU---UGCUCGcUGac -5'
19423 5' -58.4 NC_004685.1 + 45861 0.66 0.601108
Target:  5'- cGuuGCGCGCCaGCGuguCGAGCaGACUc -3'
miRNA:   3'- aCgcCGCGUGGaCGUu--GCUCG-CUGAc -5'
19423 5' -58.4 NC_004685.1 + 17818 0.66 0.601108
Target:  5'- cUGaUGGCGCAUCaGCauAugGAGCGcaACUGg -3'
miRNA:   3'- -AC-GCCGCGUGGaCG--UugCUCGC--UGAC- -5'
19423 5' -58.4 NC_004685.1 + 22320 0.66 0.579844
Target:  5'- cGCGGUaCGCaaacGCAAUG-GCGGCUGg -3'
miRNA:   3'- aCGCCGcGUGga--CGUUGCuCGCUGAC- -5'
19423 5' -58.4 NC_004685.1 + 11847 0.66 0.579844
Target:  5'- gGUgGGCGCgaccgccgACCUGCucgGCGAGgCGAUUGu -3'
miRNA:   3'- aCG-CCGCG--------UGGACGu--UGCUC-GCUGAC- -5'
19423 5' -58.4 NC_004685.1 + 33152 0.66 0.578784
Target:  5'- uUGCcGCGCACCUcgacggucaugucGCAGuCGAGCGGa-- -3'
miRNA:   3'- -ACGcCGCGUGGA-------------CGUU-GCUCGCUgac -5'
19423 5' -58.4 NC_004685.1 + 57335 0.66 0.576667
Target:  5'- gGCGGCaGC-CCUGCGccccugggucgacaACGAGgGGCc- -3'
miRNA:   3'- aCGCCG-CGuGGACGU--------------UGCUCgCUGac -5'
19423 5' -58.4 NC_004685.1 + 31329 0.66 0.558743
Target:  5'- -aCGGCGCGCa-GCAGCaGGCGAUg- -3'
miRNA:   3'- acGCCGCGUGgaCGUUGcUCGCUGac -5'
19423 5' -58.4 NC_004685.1 + 11718 0.67 0.548272
Target:  5'- cUGCGuGUGUGCCcGCGacaaACGAGUGGCa- -3'
miRNA:   3'- -ACGC-CGCGUGGaCGU----UGCUCGCUGac -5'
19423 5' -58.4 NC_004685.1 + 29138 0.67 0.548272
Target:  5'- -uCGGCGCACUgGuCGACG-GCGAcCUGg -3'
miRNA:   3'- acGCCGCGUGGaC-GUUGCuCGCU-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.