miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19424 5' -55.9 NC_004685.1 + 31249 0.66 0.802197
Target:  5'- cGGCGcGGCGG-CGAGcgUCG-CGACGa -3'
miRNA:   3'- -CUGCuCCGCCaGCUCa-AGCgGUUGCc -5'
19424 5' -55.9 NC_004685.1 + 37516 0.66 0.802197
Target:  5'- cGACGAacGGCaGGUCGAugcccUUGCCGuCGGa -3'
miRNA:   3'- -CUGCU--CCG-CCAGCUca---AGCGGUuGCC- -5'
19424 5' -55.9 NC_004685.1 + 39092 0.66 0.792851
Target:  5'- aACGcGGCcGaCGGGUUCGCCGgguucuACGGa -3'
miRNA:   3'- cUGCuCCGcCaGCUCAAGCGGU------UGCC- -5'
19424 5' -55.9 NC_004685.1 + 18431 0.66 0.792851
Target:  5'- aGGCGGcacuGCGGUUGaAGUgcgcgUCGCCAcuGCGGc -3'
miRNA:   3'- -CUGCUc---CGCCAGC-UCA-----AGCGGU--UGCC- -5'
19424 5' -55.9 NC_004685.1 + 37931 0.66 0.783349
Target:  5'- gGGCG-GGUGGUCgGAGcUgGCCGGCa- -3'
miRNA:   3'- -CUGCuCCGCCAG-CUCaAgCGGUUGcc -5'
19424 5' -55.9 NC_004685.1 + 33597 0.66 0.772728
Target:  5'- gGACGAGGCcgcGGUggacaucUGGGUUCGgauggaCGACGGc -3'
miRNA:   3'- -CUGCUCCG---CCA-------GCUCAAGCg-----GUUGCC- -5'
19424 5' -55.9 NC_004685.1 + 61586 0.66 0.772728
Target:  5'- cGACGccgccGGGCGGUCGGccGUUCuacucgaacgacgGCCAACu- -3'
miRNA:   3'- -CUGC-----UCCGCCAGCU--CAAG-------------CGGUUGcc -5'
19424 5' -55.9 NC_004685.1 + 30841 0.66 0.763916
Target:  5'- --aGuGGCaGGUCGAGgaCGCCAA-GGu -3'
miRNA:   3'- cugCuCCG-CCAGCUCaaGCGGUUgCC- -5'
19424 5' -55.9 NC_004685.1 + 55090 0.66 0.755001
Target:  5'- -cCGAGGCGGUgccCGAGgagggcaagcugcaCGCCGacACGGu -3'
miRNA:   3'- cuGCUCCGCCA---GCUCaa------------GCGGU--UGCC- -5'
19424 5' -55.9 NC_004685.1 + 54599 0.67 0.743978
Target:  5'- cGAuCGAGGCGcagacaucgaaGUCGGcguggcGUUCGCCgGGCGGc -3'
miRNA:   3'- -CU-GCUCCGC-----------CAGCU------CAAGCGG-UUGCC- -5'
19424 5' -55.9 NC_004685.1 + 67540 0.67 0.733845
Target:  5'- cGACGAGcUGGUCGAcUUCugaaaaucccGCCGAUGGu -3'
miRNA:   3'- -CUGCUCcGCCAGCUcAAG----------CGGUUGCC- -5'
19424 5' -55.9 NC_004685.1 + 54835 0.67 0.729765
Target:  5'- cGGCGAuGGCGGUgcggcgUGAGUUCGUgcgucgcugcugaAGCGGa -3'
miRNA:   3'- -CUGCU-CCGCCA------GCUCAAGCGg------------UUGCC- -5'
19424 5' -55.9 NC_004685.1 + 11871 0.67 0.723617
Target:  5'- cGGCGAGGCGauuGUCGAGcucaUCGagaCCGAgGGu -3'
miRNA:   3'- -CUGCUCCGC---CAGCUCa---AGC---GGUUgCC- -5'
19424 5' -55.9 NC_004685.1 + 39590 0.67 0.713304
Target:  5'- -uCGGGaGCGGUCGA---UGCCuAGCGGa -3'
miRNA:   3'- cuGCUC-CGCCAGCUcaaGCGG-UUGCC- -5'
19424 5' -55.9 NC_004685.1 + 49741 0.67 0.713304
Target:  5'- -cCGGGGCGGaucaucgCGGGguucgUCGCCAA-GGa -3'
miRNA:   3'- cuGCUCCGCCa------GCUCa----AGCGGUUgCC- -5'
19424 5' -55.9 NC_004685.1 + 58908 0.67 0.713304
Target:  5'- aGGCGcGGU-GUCGGGcagUGCCGACGGu -3'
miRNA:   3'- -CUGCuCCGcCAGCUCaa-GCGGUUGCC- -5'
19424 5' -55.9 NC_004685.1 + 16660 0.67 0.713304
Target:  5'- aGGCGAcGGCagcgcccagcGGUCGAGcgcCGCCAucaccGCGGu -3'
miRNA:   3'- -CUGCU-CCG----------CCAGCUCaa-GCGGU-----UGCC- -5'
19424 5' -55.9 NC_004685.1 + 22676 0.67 0.692465
Target:  5'- cGCGGGGCcacuGUCGAGgaggUUGUCAccGCGGu -3'
miRNA:   3'- cUGCUCCGc---CAGCUCa---AGCGGU--UGCC- -5'
19424 5' -55.9 NC_004685.1 + 14640 0.67 0.692465
Target:  5'- aGugGcGGCGGUCGGGgcucaugUCGagcaCCAGCGcGg -3'
miRNA:   3'- -CugCuCCGCCAGCUCa------AGC----GGUUGC-C- -5'
19424 5' -55.9 NC_004685.1 + 61369 0.67 0.692465
Target:  5'- gGACGAGGCGuUUGAGaUgGCCcGCGu -3'
miRNA:   3'- -CUGCUCCGCcAGCUCaAgCGGuUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.