miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19426 5' -62 NC_004685.1 + 53348 0.66 0.469414
Target:  5'- gCACCucCaGCGCGGCgCCGgugGCcgcggcgauGCUGGc -3'
miRNA:   3'- -GUGGuuGcCGCGCCG-GGCa--CG---------CGACC- -5'
19426 5' -62 NC_004685.1 + 33620 0.66 0.469414
Target:  5'- uGCCGGuuggUGGUgGUGGCgaacCCGUcGCGCUGGg -3'
miRNA:   3'- gUGGUU----GCCG-CGCCG----GGCA-CGCGACC- -5'
19426 5' -62 NC_004685.1 + 64435 0.66 0.469414
Target:  5'- uGCCAgcgucuggGCGGcCGCcauuGCCCGaucGUGCUGGa -3'
miRNA:   3'- gUGGU--------UGCC-GCGc---CGGGCa--CGCGACC- -5'
19426 5' -62 NC_004685.1 + 49329 0.66 0.469414
Target:  5'- gCGCUGAUGGCGCuGcGUUCGgccGCGUUGGc -3'
miRNA:   3'- -GUGGUUGCCGCG-C-CGGGCa--CGCGACC- -5'
19426 5' -62 NC_004685.1 + 69597 0.66 0.460041
Target:  5'- gGCCAACgGGCGCGcGUCCacacggGCGCg-- -3'
miRNA:   3'- gUGGUUG-CCGCGC-CGGGca----CGCGacc -5'
19426 5' -62 NC_004685.1 + 4668 0.66 0.460041
Target:  5'- uCGCCAGCGaGCggaccugacGCGGCCCGaaUGuCGCa-- -3'
miRNA:   3'- -GUGGUUGC-CG---------CGCCGGGC--AC-GCGacc -5'
19426 5' -62 NC_004685.1 + 57949 0.66 0.460041
Target:  5'- -uCCAuCGGgcacaGCGGgCCGUGCGC-GGu -3'
miRNA:   3'- guGGUuGCCg----CGCCgGGCACGCGaCC- -5'
19426 5' -62 NC_004685.1 + 66090 0.66 0.450768
Target:  5'- aCGCCGACGGCuCGGCgCGgGUGUa-- -3'
miRNA:   3'- -GUGGUUGCCGcGCCGgGCaCGCGacc -5'
19426 5' -62 NC_004685.1 + 52619 0.66 0.450768
Target:  5'- aACCuGAUGGCGuCGGCguucgCCGcgGCGCUGc -3'
miRNA:   3'- gUGG-UUGCCGC-GCCG-----GGCa-CGCGACc -5'
19426 5' -62 NC_004685.1 + 52657 0.66 0.450768
Target:  5'- gCGCCGACGGCaacgaGCGGCC-----GCUGGa -3'
miRNA:   3'- -GUGGUUGCCG-----CGCCGGgcacgCGACC- -5'
19426 5' -62 NC_004685.1 + 42851 0.66 0.450768
Target:  5'- gCGgCAACGGCgGCGGCUCaauggGUGCGUa-- -3'
miRNA:   3'- -GUgGUUGCCG-CGCCGGG-----CACGCGacc -5'
19426 5' -62 NC_004685.1 + 486 0.66 0.450768
Target:  5'- cCGCCuACGaGCagcucgagGCGGCUguCGaUGCGCUGGu -3'
miRNA:   3'- -GUGGuUGC-CG--------CGCCGG--GC-ACGCGACC- -5'
19426 5' -62 NC_004685.1 + 56889 0.66 0.450768
Target:  5'- cCGCCAGCcGCuCGGCCUGgGCGaUGGc -3'
miRNA:   3'- -GUGGUUGcCGcGCCGGGCaCGCgACC- -5'
19426 5' -62 NC_004685.1 + 32101 0.66 0.441598
Target:  5'- cCACCGGCGGgaccaGCGGCuCCGgcuugccgGUGUUGu -3'
miRNA:   3'- -GUGGUUGCCg----CGCCG-GGCa-------CGCGACc -5'
19426 5' -62 NC_004685.1 + 66625 0.66 0.441598
Target:  5'- cCACCGACuGGCacaCGGCCa--GCGCUGu -3'
miRNA:   3'- -GUGGUUG-CCGc--GCCGGgcaCGCGACc -5'
19426 5' -62 NC_004685.1 + 62011 0.66 0.441598
Target:  5'- gCAUCGucUGGCGuCGGUCgGUGCGCgacGGc -3'
miRNA:   3'- -GUGGUu-GCCGC-GCCGGgCACGCGa--CC- -5'
19426 5' -62 NC_004685.1 + 12282 0.66 0.438868
Target:  5'- -uCCGGCGGCGUGGCCUGccacagguugagguUGCccucgaacGCUGu -3'
miRNA:   3'- guGGUUGCCGCGCCGGGC--------------ACG--------CGACc -5'
19426 5' -62 NC_004685.1 + 63238 0.66 0.432535
Target:  5'- aCGCCGACGGC-CGagcugauCCUGgagGUGCUGGc -3'
miRNA:   3'- -GUGGUUGCCGcGCc------GGGCa--CGCGACC- -5'
19426 5' -62 NC_004685.1 + 1583 0.66 0.432535
Target:  5'- gGCCAGCGGguucucuaCGuCGGCCUagcgGUGCGCg-- -3'
miRNA:   3'- gUGGUUGCC--------GC-GCCGGG----CACGCGacc -5'
19426 5' -62 NC_004685.1 + 3537 0.66 0.426255
Target:  5'- gCAUCcGCGGUcugcuguGCGGCCCGUgcaaucagggcaucgGCcGCUGGn -3'
miRNA:   3'- -GUGGuUGCCG-------CGCCGGGCA---------------CG-CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.