miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19427 5' -52.5 NC_004685.1 + 38456 0.66 0.902479
Target:  5'- cUugCCGAGc-CACGA-CUGGGAGg- -3'
miRNA:   3'- uGugGGCUCuuGUGUUaGACCCUCag -5'
19427 5' -52.5 NC_004685.1 + 17685 0.66 0.895495
Target:  5'- uCACCCc-GAGCACGugcuGUCUGcGGAgGUCa -3'
miRNA:   3'- uGUGGGcuCUUGUGU----UAGAC-CCU-CAG- -5'
19427 5' -52.5 NC_004685.1 + 23011 0.66 0.88824
Target:  5'- -aGCCCGAcGACACGAUCcgugucgauggUGuGGAGUa -3'
miRNA:   3'- ugUGGGCUcUUGUGUUAG-----------AC-CCUCAg -5'
19427 5' -52.5 NC_004685.1 + 43305 0.67 0.856627
Target:  5'- uCGCgCUGGGAcgAgACGAUCUGGG-GUCc -3'
miRNA:   3'- uGUG-GGCUCU--UgUGUUAGACCCuCAG- -5'
19427 5' -52.5 NC_004685.1 + 10008 0.67 0.848108
Target:  5'- -gGCCCGGGAAcCACAugaaccgCUGcGGGGUg -3'
miRNA:   3'- ugUGGGCUCUU-GUGUua-----GAC-CCUCAg -5'
19427 5' -52.5 NC_004685.1 + 31895 0.68 0.821207
Target:  5'- gACugCCGGGuguGCACGuggauguugCUGGG-GUCg -3'
miRNA:   3'- -UGugGGCUCu--UGUGUua-------GACCCuCAG- -5'
19427 5' -52.5 NC_004685.1 + 54109 0.69 0.741381
Target:  5'- gGCACuuGuccGAGCACAGUUcGGuGGGUCg -3'
miRNA:   3'- -UGUGggCu--CUUGUGUUAGaCC-CUCAG- -5'
19427 5' -52.5 NC_004685.1 + 6938 0.7 0.698406
Target:  5'- gGCACCCGGGGuCACGG-C-GGGAGcCg -3'
miRNA:   3'- -UGUGGGCUCUuGUGUUaGaCCCUCaG- -5'
19427 5' -52.5 NC_004685.1 + 53258 0.71 0.643296
Target:  5'- uACACCCGcugGGGGCGCAAccggCUGGGcGUg -3'
miRNA:   3'- -UGUGGGC---UCUUGUGUUa---GACCCuCAg -5'
19427 5' -52.5 NC_004685.1 + 65645 0.76 0.357867
Target:  5'- -gACCCGcAGuaccGCACAAUgUGGGAGUCc -3'
miRNA:   3'- ugUGGGC-UCu---UGUGUUAgACCCUCAG- -5'
19427 5' -52.5 NC_004685.1 + 15371 1.1 0.00194
Target:  5'- cACACCCGAGAACACAAUCUGGGAGUCg -3'
miRNA:   3'- -UGUGGGCUCUUGUGUUAGACCCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.