miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19430 3' -58 NC_004685.1 + 1491 0.66 0.697475
Target:  5'- cCUCAGcCGAGGCgaCGAGGCgaucgaGACCa -3'
miRNA:   3'- cGAGUC-GCUCUG--GCUCCGgcag--CUGG- -5'
19430 3' -58 NC_004685.1 + 43308 0.66 0.697475
Target:  5'- cGCUgGGaCGAGACgaucUGGGGuCCGUcCGGCa -3'
miRNA:   3'- -CGAgUC-GCUCUG----GCUCC-GGCA-GCUGg -5'
19430 3' -58 NC_004685.1 + 43916 0.66 0.697475
Target:  5'- uCUgGGCGAGcggcCCGcgcAGGUCGgggCGGCCg -3'
miRNA:   3'- cGAgUCGCUCu---GGC---UCCGGCa--GCUGG- -5'
19430 3' -58 NC_004685.1 + 63485 0.66 0.697475
Target:  5'- ----cGCGAcGACCGAGGCuucauCGUCGAa- -3'
miRNA:   3'- cgaguCGCU-CUGGCUCCG-----GCAGCUgg -5'
19430 3' -58 NC_004685.1 + 3111 0.66 0.687139
Target:  5'- uUUCAGgGuGACguccugggUGAGGCCGUCGucgcucaucgcGCCg -3'
miRNA:   3'- cGAGUCgCuCUG--------GCUCCGGCAGC-----------UGG- -5'
19430 3' -58 NC_004685.1 + 43227 0.66 0.687139
Target:  5'- -aUCAuCGuGACCGAGGCCaaggcgcgCGGCUa -3'
miRNA:   3'- cgAGUcGCuCUGGCUCCGGca------GCUGG- -5'
19430 3' -58 NC_004685.1 + 15662 0.66 0.676754
Target:  5'- gGCUCGcGCGuuGCCGuGGau-UCGACCg -3'
miRNA:   3'- -CGAGU-CGCucUGGCuCCggcAGCUGG- -5'
19430 3' -58 NC_004685.1 + 9231 0.66 0.676754
Target:  5'- gGC-CAGCGcGGauugggccagcGCCGGGGCCGcCGAaaccCCg -3'
miRNA:   3'- -CGaGUCGC-UC-----------UGGCUCCGGCaGCU----GG- -5'
19430 3' -58 NC_004685.1 + 8103 0.66 0.676754
Target:  5'- gGgUCGGUGGucaacgcgcuGGCCGAGGCCGgguuCCg -3'
miRNA:   3'- -CgAGUCGCU----------CUGGCUCCGGCagcuGG- -5'
19430 3' -58 NC_004685.1 + 54689 0.66 0.673631
Target:  5'- uGCUCGGU---GCCGAGGuCCGcucgggugugcugcUCGAUCa -3'
miRNA:   3'- -CGAGUCGcucUGGCUCC-GGC--------------AGCUGG- -5'
19430 3' -58 NC_004685.1 + 16280 0.66 0.673631
Target:  5'- uCUCGGCGAGGuucugcacguacuuCUGAagcaGGCCGaugaCGACCu -3'
miRNA:   3'- cGAGUCGCUCU--------------GGCU----CCGGCa---GCUGG- -5'
19430 3' -58 NC_004685.1 + 44319 0.66 0.670505
Target:  5'- aGCUgGGCGGGcgcacccuggucgacGCgGuGGCCG-CGAUCg -3'
miRNA:   3'- -CGAgUCGCUC---------------UGgCuCCGGCaGCUGG- -5'
19430 3' -58 NC_004685.1 + 26338 0.66 0.666332
Target:  5'- uGCUCAGCGA---CGAGG-CGaUGGCCg -3'
miRNA:   3'- -CGAGUCGCUcugGCUCCgGCaGCUGG- -5'
19430 3' -58 NC_004685.1 + 34679 0.66 0.666332
Target:  5'- cCUCGGCcAGGCgCucGGCagCGUCGGCCg -3'
miRNA:   3'- cGAGUCGcUCUG-GcuCCG--GCAGCUGG- -5'
19430 3' -58 NC_004685.1 + 22990 0.66 0.666332
Target:  5'- aGCUCGGCGGucucCCGAaacgucagcGGCCGaugUCGGCa -3'
miRNA:   3'- -CGAGUCGCUcu--GGCU---------CCGGC---AGCUGg -5'
19430 3' -58 NC_004685.1 + 16232 0.66 0.663199
Target:  5'- gGCgCGGCGcggccgacuccaggGGACCGuGGCCGugcgcgUCGGCg -3'
miRNA:   3'- -CGaGUCGC--------------UCUGGCuCCGGC------AGCUGg -5'
19430 3' -58 NC_004685.1 + 4157 0.66 0.65588
Target:  5'- cCUCGGCGAGcuuGCCGAcgacGCCcgccagcUCGGCCa -3'
miRNA:   3'- cGAGUCGCUC---UGGCUc---CGGc------AGCUGG- -5'
19430 3' -58 NC_004685.1 + 53554 0.66 0.65588
Target:  5'- aGCUguGCGaAGACugcggCGAGGUagUGcCGACCg -3'
miRNA:   3'- -CGAguCGC-UCUG-----GCUCCG--GCaGCUGG- -5'
19430 3' -58 NC_004685.1 + 42918 0.66 0.65588
Target:  5'- cGCUCAGCGcaaacAGGgCGAccuGGCCGggaGCCa -3'
miRNA:   3'- -CGAGUCGC-----UCUgGCU---CCGGCagcUGG- -5'
19430 3' -58 NC_004685.1 + 60889 0.66 0.654833
Target:  5'- aGgUCGGCGGcgcguaucucgauGGCCGuGGUgGUCGuCCg -3'
miRNA:   3'- -CgAGUCGCU-------------CUGGCuCCGgCAGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.