miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19430 5' -53.5 NC_004685.1 + 11974 0.66 0.855741
Target:  5'- cGGGUCGGGUUacgGUGCacugCC-AGUGCGa -3'
miRNA:   3'- aCCUAGCUCAG---CGCGa---GGuUCAUGCg -5'
19430 5' -53.5 NC_004685.1 + 69588 0.67 0.83873
Target:  5'- gUGcGcgCGGGUUucgGCGCgaCGAGUGCGCg -3'
miRNA:   3'- -AC-CuaGCUCAG---CGCGagGUUCAUGCG- -5'
19430 5' -53.5 NC_004685.1 + 9052 0.67 0.829901
Target:  5'- cUGGA-CGGGUCGCGCaCCcgcgACGUu -3'
miRNA:   3'- -ACCUaGCUCAGCGCGaGGuucaUGCG- -5'
19430 5' -53.5 NC_004685.1 + 14057 0.67 0.820868
Target:  5'- cGGcgCGAcccgcUCGCGCUUgGcGUACGCc -3'
miRNA:   3'- aCCuaGCUc----AGCGCGAGgUuCAUGCG- -5'
19430 5' -53.5 NC_004685.1 + 69706 0.67 0.820868
Target:  5'- cGGggCGGGcgCGCGC-CCGuGUggACGCg -3'
miRNA:   3'- aCCuaGCUCa-GCGCGaGGUuCA--UGCG- -5'
19430 5' -53.5 NC_004685.1 + 58110 0.68 0.782885
Target:  5'- aGGGcguUCGAuuUCGCGCUUCuGGUAgGCg -3'
miRNA:   3'- aCCU---AGCUc-AGCGCGAGGuUCAUgCG- -5'
19430 5' -53.5 NC_004685.1 + 10663 0.68 0.782885
Target:  5'- cUGGAUCGucgcGUCGUGUggCgGGGcGCGCa -3'
miRNA:   3'- -ACCUAGCu---CAGCGCGa-GgUUCaUGCG- -5'
19430 5' -53.5 NC_004685.1 + 65033 0.68 0.782885
Target:  5'- cGuGGUCG-G-CGCGCUCguGGUcgGCGCg -3'
miRNA:   3'- aC-CUAGCuCaGCGCGAGguUCA--UGCG- -5'
19430 5' -53.5 NC_004685.1 + 64893 0.68 0.752749
Target:  5'- gGGcAUCGGcgCGUGCUCgAAGUGCGg -3'
miRNA:   3'- aCC-UAGCUcaGCGCGAGgUUCAUGCg -5'
19430 5' -53.5 NC_004685.1 + 9650 0.68 0.752749
Target:  5'- gGGAUCaGGUCGCGCgccguggCCAucgcCGCa -3'
miRNA:   3'- aCCUAGcUCAGCGCGa------GGUucauGCG- -5'
19430 5' -53.5 NC_004685.1 + 8553 0.68 0.742447
Target:  5'- cGGuGUCGGGUCuGCGCcuguUUCGGGUGcCGCc -3'
miRNA:   3'- aCC-UAGCUCAG-CGCG----AGGUUCAU-GCG- -5'
19430 5' -53.5 NC_004685.1 + 3374 0.69 0.732036
Target:  5'- cGGGUCGAGUCGguaGUUC--AGcGCGCg -3'
miRNA:   3'- aCCUAGCUCAGCg--CGAGguUCaUGCG- -5'
19430 5' -53.5 NC_004685.1 + 3961 0.69 0.732036
Target:  5'- aGGcUCGGG-CGCGgUCCAgaAGUcCGCg -3'
miRNA:   3'- aCCuAGCUCaGCGCgAGGU--UCAuGCG- -5'
19430 5' -53.5 NC_004685.1 + 12495 0.69 0.721527
Target:  5'- aGGAUCGGGUgGUGCg-CGAGgagcCGCu -3'
miRNA:   3'- aCCUAGCUCAgCGCGagGUUCau--GCG- -5'
19430 5' -53.5 NC_004685.1 + 68308 0.69 0.71093
Target:  5'- cGGGUcCGAGU-GUGCgggUCCGAGUGUGCg -3'
miRNA:   3'- aCCUA-GCUCAgCGCG---AGGUUCAUGCG- -5'
19430 5' -53.5 NC_004685.1 + 26023 0.69 0.68952
Target:  5'- cUGGGgcgcaUCGAGUCGgGCacccgCCGAGUcgACGUc -3'
miRNA:   3'- -ACCU-----AGCUCAGCgCGa----GGUUCA--UGCG- -5'
19430 5' -53.5 NC_004685.1 + 58996 0.7 0.655937
Target:  5'- cGGAgUCGAGgcugCGCGgcaucuuCUCCAAGaucgACGCg -3'
miRNA:   3'- aCCU-AGCUCa---GCGC-------GAGGUUCa---UGCG- -5'
19430 5' -53.5 NC_004685.1 + 35801 0.7 0.635231
Target:  5'- aGGAUCGAGagCGCGUcgaucaUCCAGGagaauguCGCg -3'
miRNA:   3'- aCCUAGCUCa-GCGCG------AGGUUCau-----GCG- -5'
19430 5' -53.5 NC_004685.1 + 41709 0.71 0.613426
Target:  5'- cGGAggUCGAuUCGaucCGCUCCAGGUACa- -3'
miRNA:   3'- aCCU--AGCUcAGC---GCGAGGUUCAUGcg -5'
19430 5' -53.5 NC_004685.1 + 68393 0.71 0.602543
Target:  5'- cGGGUcCGAGUgUGCGCcCCGGGUccgauGCGCc -3'
miRNA:   3'- aCCUA-GCUCA-GCGCGaGGUUCA-----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.