miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19440 5' -56.2 NC_004685.1 + 18859 0.66 0.788146
Target:  5'- cGCCGAgCAgaUCAGAAagcuGACCGcGCGGu- -3'
miRNA:   3'- cCGGCUgGU--AGUCUU----CUGGC-CGCUgg -5'
19440 5' -56.2 NC_004685.1 + 19928 0.66 0.788146
Target:  5'- aGCCGcccACCGUCAugguuGggGGCCGG-GAUUu -3'
miRNA:   3'- cCGGC---UGGUAGU-----CuuCUGGCCgCUGG- -5'
19440 5' -56.2 NC_004685.1 + 37280 0.66 0.788146
Target:  5'- uGCCGGguCCGuUCGGG---UCGGCGGCCg -3'
miRNA:   3'- cCGGCU--GGU-AGUCUucuGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 40609 0.66 0.788146
Target:  5'- cGGCgGcACCAUCuacgaccugguGAAGuuCGGCGAgCa -3'
miRNA:   3'- -CCGgC-UGGUAGu----------CUUCugGCCGCUgG- -5'
19440 5' -56.2 NC_004685.1 + 21556 0.66 0.788146
Target:  5'- gGGuuGACCGgcgcaaaCAGggGACCGaaguCGcCCa -3'
miRNA:   3'- -CCggCUGGUa------GUCuuCUGGCc---GCuGG- -5'
19440 5' -56.2 NC_004685.1 + 39955 0.66 0.788146
Target:  5'- cGGCggCGACCGcaccUCGGGccAGACCcugacccuGGCGcACCg -3'
miRNA:   3'- -CCG--GCUGGU----AGUCU--UCUGG--------CCGC-UGG- -5'
19440 5' -56.2 NC_004685.1 + 43642 0.66 0.788146
Target:  5'- uGCuUGAUC-UCGGugagauAGGCgCGGCGACCg -3'
miRNA:   3'- cCG-GCUGGuAGUCu-----UCUG-GCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 30387 0.66 0.788146
Target:  5'- cGGCUGAaguaCAUgGGcAAGAacCCGGCcACCa -3'
miRNA:   3'- -CCGGCUg---GUAgUC-UUCU--GGCCGcUGG- -5'
19440 5' -56.2 NC_004685.1 + 53527 0.66 0.785295
Target:  5'- uGCCGACCGccgacaUCgccaagggcuucgaAGAGGG-CGGCGACa -3'
miRNA:   3'- cCGGCUGGU------AG--------------UCUUCUgGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 13867 0.66 0.78243
Target:  5'- gGGCCagcacGCCAUCGGGGcGGuacgccagcagcagcCCGGCGAUg -3'
miRNA:   3'- -CCGGc----UGGUAGUCUU-CU---------------GGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 18102 0.66 0.778591
Target:  5'- uGGCCGcgccuucgucGCCGaugCGGuGGugCGGCaGCCa -3'
miRNA:   3'- -CCGGC----------UGGUa--GUCuUCugGCCGcUGG- -5'
19440 5' -56.2 NC_004685.1 + 69670 0.66 0.778591
Target:  5'- uGGCCG-CUAggCGGu--AgCGGCGACCg -3'
miRNA:   3'- -CCGGCuGGUa-GUCuucUgGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 57155 0.66 0.778591
Target:  5'- aGGCCGGgCA--GGAAaucGACCGGCugcucGCCg -3'
miRNA:   3'- -CCGGCUgGUagUCUU---CUGGCCGc----UGG- -5'
19440 5' -56.2 NC_004685.1 + 532 0.66 0.778591
Target:  5'- cGCCGACC-UCAcc-GACCG-CGGCUg -3'
miRNA:   3'- cCGGCUGGuAGUcuuCUGGCcGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 9178 0.66 0.778591
Target:  5'- uGGUC-ACCAUgCGGuuGAacUCGGUGACCg -3'
miRNA:   3'- -CCGGcUGGUA-GUCuuCU--GGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 45599 0.66 0.778591
Target:  5'- cGCCGACgAUCAc---ACCGGCaauGGCCu -3'
miRNA:   3'- cCGGCUGgUAGUcuucUGGCCG---CUGG- -5'
19440 5' -56.2 NC_004685.1 + 58329 0.66 0.768894
Target:  5'- cGGCCGGCaCAgccUCGGugucGGGGCgGGUcGCCg -3'
miRNA:   3'- -CCGGCUG-GU---AGUC----UUCUGgCCGcUGG- -5'
19440 5' -56.2 NC_004685.1 + 61495 0.66 0.768894
Target:  5'- cGGCCGACCGc-------CCGGCGGCg -3'
miRNA:   3'- -CCGGCUGGUagucuucuGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 64684 0.66 0.768894
Target:  5'- cGGCC-ACCAUCGccu--CCaGCGACCa -3'
miRNA:   3'- -CCGGcUGGUAGUcuucuGGcCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 19208 0.66 0.768894
Target:  5'- cGCCGACCAgcUCGacgcgcACUGGCuGACCa -3'
miRNA:   3'- cCGGCUGGU--AGUcuuc--UGGCCG-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.