miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19440 5' -56.2 NC_004685.1 + 4109 0.66 0.739059
Target:  5'- uGCCGACauagcccuCGUCAGGugugGGAUCGGCcaguucuccgacGACCu -3'
miRNA:   3'- cCGGCUG--------GUAGUCU----UCUGGCCG------------CUGG- -5'
19440 5' -56.2 NC_004685.1 + 18859 0.66 0.788146
Target:  5'- cGCCGAgCAgaUCAGAAagcuGACCGcGCGGu- -3'
miRNA:   3'- cCGGCUgGU--AGUCUU----CUGGC-CGCUgg -5'
19440 5' -56.2 NC_004685.1 + 14482 0.66 0.749118
Target:  5'- uGGCCG-CCu--GGuccGACCugGGCGACCg -3'
miRNA:   3'- -CCGGCuGGuagUCuu-CUGG--CCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 19208 0.66 0.768894
Target:  5'- cGCCGACCAgcUCGacgcgcACUGGCuGACCa -3'
miRNA:   3'- cCGGCUGGU--AGUcuuc--UGGCCG-CUGG- -5'
19440 5' -56.2 NC_004685.1 + 68451 0.66 0.739059
Target:  5'- gGGCCG-CCAgucc--GAUgGGCGGCCg -3'
miRNA:   3'- -CCGGCuGGUagucuuCUGgCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 37338 0.66 0.759066
Target:  5'- uGCCGAgaUCAUCGcGAAgaucuacgaacuGACCGGCaucGACCu -3'
miRNA:   3'- cCGGCU--GGUAGU-CUU------------CUGGCCG---CUGG- -5'
19440 5' -56.2 NC_004685.1 + 39838 0.66 0.756094
Target:  5'- cGGCCGA-CAUCAcGgcGGCCaucgacgcgcugguGGCGuCCa -3'
miRNA:   3'- -CCGGCUgGUAGU-CuuCUGG--------------CCGCuGG- -5'
19440 5' -56.2 NC_004685.1 + 64684 0.66 0.768894
Target:  5'- cGGCC-ACCAUCGccu--CCaGCGACCa -3'
miRNA:   3'- -CCGGcUGGUAGUcuucuGGcCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 3246 0.66 0.759066
Target:  5'- gGGCCgGACCAUCGGcgccgguuuGGGuuCGGUGAa- -3'
miRNA:   3'- -CCGG-CUGGUAGUC---------UUCugGCCGCUgg -5'
19440 5' -56.2 NC_004685.1 + 1864 0.66 0.765959
Target:  5'- cGGCuuCGGCCAgguugaggauggcgUCGGucAGGCCG-CGGCCg -3'
miRNA:   3'- -CCG--GCUGGU--------------AGUCu-UCUGGCcGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 37280 0.66 0.788146
Target:  5'- uGCCGGguCCGuUCGGG---UCGGCGGCCg -3'
miRNA:   3'- cCGGCU--GGU-AGUCUucuGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 24762 0.66 0.749118
Target:  5'- cGGCaacuCGAUCGUC-GAGGAccCCGGC-ACCg -3'
miRNA:   3'- -CCG----GCUGGUAGuCUUCU--GGCCGcUGG- -5'
19440 5' -56.2 NC_004685.1 + 36656 0.66 0.767917
Target:  5'- cGCCGACggguuugagcuggUGUCAccGAAGGUCGGCGACa -3'
miRNA:   3'- cCGGCUG-------------GUAGU--CUUCUGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 58329 0.66 0.768894
Target:  5'- cGGCCGGCaCAgccUCGGugucGGGGCgGGUcGCCg -3'
miRNA:   3'- -CCGGCUG-GU---AGUC----UUCUGgCCGcUGG- -5'
19440 5' -56.2 NC_004685.1 + 27314 0.66 0.768894
Target:  5'- uGCUGGCUAU----GGACUGGCGGCa -3'
miRNA:   3'- cCGGCUGGUAgucuUCUGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 39955 0.66 0.788146
Target:  5'- cGGCggCGACCGcaccUCGGGccAGACCcugacccuGGCGcACCg -3'
miRNA:   3'- -CCG--GCUGGU----AGUCU--UCUGG--------CCGC-UGG- -5'
19440 5' -56.2 NC_004685.1 + 61495 0.66 0.768894
Target:  5'- cGGCCGACCGc-------CCGGCGGCg -3'
miRNA:   3'- -CCGGCUGGUagucuucuGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 3030 0.66 0.749118
Target:  5'- uGCgGGCCAUCAcGGAGccucgucucCUGGCGGCa -3'
miRNA:   3'- cCGgCUGGUAGU-CUUCu--------GGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 30387 0.66 0.788146
Target:  5'- cGGCUGAaguaCAUgGGcAAGAacCCGGCcACCa -3'
miRNA:   3'- -CCGGCUg---GUAgUC-UUCU--GGCCGcUGG- -5'
19440 5' -56.2 NC_004685.1 + 44124 0.66 0.767917
Target:  5'- gGGCCGGCgCGgcgCAGGgcaaaugGGAccCCGGCaACCu -3'
miRNA:   3'- -CCGGCUG-GUa--GUCU-------UCU--GGCCGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.