miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19440 5' -56.2 NC_004685.1 + 20915 1.14 0.000608
Target:  5'- cGGCCGACCAUCAGAAGACCGGCGACCu -3'
miRNA:   3'- -CCGGCUGGUAGUCUUCUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 67275 0.81 0.115413
Target:  5'- uGGCCGACCGggcgcaAGGAGGCCGcGCGAUg -3'
miRNA:   3'- -CCGGCUGGUag----UCUUCUGGC-CGCUGg -5'
19440 5' -56.2 NC_004685.1 + 68544 0.81 0.118581
Target:  5'- cGGCCGcCCAUC---GGACUGGCGGCCc -3'
miRNA:   3'- -CCGGCuGGUAGucuUCUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 10190 0.8 0.14274
Target:  5'- uGGCCGGgucgaggUCAacUCGGAGGACUGGCGGCUg -3'
miRNA:   3'- -CCGGCU-------GGU--AGUCUUCUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 53564 0.8 0.143122
Target:  5'- cGCCGACCAUCuu--GACCGGCacaguGACCa -3'
miRNA:   3'- cCGGCUGGUAGucuuCUGGCCG-----CUGG- -5'
19440 5' -56.2 NC_004685.1 + 36466 0.78 0.181463
Target:  5'- aGGCCG-CCGUC---GGGCgCGGCGACCg -3'
miRNA:   3'- -CCGGCuGGUAGucuUCUG-GCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 16223 0.78 0.181463
Target:  5'- cGGCCGACUc-CAGggGACCG-UGGCCg -3'
miRNA:   3'- -CCGGCUGGuaGUCuuCUGGCcGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 67087 0.77 0.222347
Target:  5'- cGGCCGcugucgccGCCAUCAccggcaccgugauGAugGGGCCGGUGGCCu -3'
miRNA:   3'- -CCGGC--------UGGUAGU-------------CU--UCUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 57301 0.77 0.222912
Target:  5'- gGGCCGACCGU-GGAcgcGGCCGGUGccGCCa -3'
miRNA:   3'- -CCGGCUGGUAgUCUu--CUGGCCGC--UGG- -5'
19440 5' -56.2 NC_004685.1 + 1837 0.76 0.246511
Target:  5'- uGUCGACCAUCGGGA---CGGUGACCa -3'
miRNA:   3'- cCGGCUGGUAGUCUUcugGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 23748 0.75 0.272144
Target:  5'- aGCCGguGCCGUacucCAGcAGGCCGGCGACa -3'
miRNA:   3'- cCGGC--UGGUA----GUCuUCUGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 69308 0.75 0.272144
Target:  5'- uGGCCGccACCAugUCGGAgacGGACaacccguaGGCGACCa -3'
miRNA:   3'- -CCGGC--UGGU--AGUCU---UCUGg-------CCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 56959 0.75 0.299874
Target:  5'- gGGCCGuGCCGUCgacaAGAAGGuuGucGCGACCg -3'
miRNA:   3'- -CCGGC-UGGUAG----UCUUCUggC--CGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 60991 0.75 0.299874
Target:  5'- gGGUCGACCAcgCAGGccguGCCGGCGAUg -3'
miRNA:   3'- -CCGGCUGGUa-GUCUuc--UGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 68621 0.74 0.314538
Target:  5'- uGGCCGGggccacagcCCcgCAucGGACUGGCGGCCc -3'
miRNA:   3'- -CCGGCU---------GGuaGUcuUCUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 58447 0.74 0.322071
Target:  5'- gGGCCGugCGc-----GACCGGCGACCc -3'
miRNA:   3'- -CCGGCugGUagucuuCUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 53227 0.74 0.33754
Target:  5'- uGCCGcACCAUCAGGuAGGuggUGGCGGCCu -3'
miRNA:   3'- cCGGC-UGGUAGUCU-UCUg--GCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 45198 0.73 0.353541
Target:  5'- aGGCUGGCCAUCGGuGAGccGCCGuagucCGGCCa -3'
miRNA:   3'- -CCGGCUGGUAGUC-UUC--UGGCc----GCUGG- -5'
19440 5' -56.2 NC_004685.1 + 20992 0.73 0.370072
Target:  5'- uGGUCGGCCGcgCGGGcauAGACCuccaGGCGAUCa -3'
miRNA:   3'- -CCGGCUGGUa-GUCU---UCUGG----CCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 34801 0.73 0.370072
Target:  5'- cGUCGGCCugauggUAG-AGACCGGCGGCa -3'
miRNA:   3'- cCGGCUGGua----GUCuUCUGGCCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.