miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19440 5' -56.2 NC_004685.1 + 42610 0.66 0.768894
Target:  5'- aGGCCagcaccgcGAacaCGUCAGc--ACCGGCGGCUg -3'
miRNA:   3'- -CCGG--------CUg--GUAGUCuucUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 39926 0.66 0.768894
Target:  5'- uGGCCG-CCGUgAuGucGGCCGGCagcgGAUCg -3'
miRNA:   3'- -CCGGCuGGUAgU-CuuCUGGCCG----CUGG- -5'
19440 5' -56.2 NC_004685.1 + 61495 0.66 0.768894
Target:  5'- cGGCCGACCGc-------CCGGCGGCg -3'
miRNA:   3'- -CCGGCUGGUagucuucuGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 19208 0.66 0.768894
Target:  5'- cGCCGACCAgcUCGacgcgcACUGGCuGACCa -3'
miRNA:   3'- cCGGCUGGU--AGUcuuc--UGGCCG-CUGG- -5'
19440 5' -56.2 NC_004685.1 + 36656 0.66 0.767917
Target:  5'- cGCCGACggguuugagcuggUGUCAccGAAGGUCGGCGACa -3'
miRNA:   3'- cCGGCUG-------------GUAGU--CUUCUGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 44124 0.66 0.767917
Target:  5'- gGGCCGGCgCGgcgCAGGgcaaaugGGAccCCGGCaACCu -3'
miRNA:   3'- -CCGGCUG-GUa--GUCU-------UCU--GGCCGcUGG- -5'
19440 5' -56.2 NC_004685.1 + 1864 0.66 0.765959
Target:  5'- cGGCuuCGGCCAgguugaggauggcgUCGGucAGGCCG-CGGCCg -3'
miRNA:   3'- -CCG--GCUGGU--------------AGUCu-UCUGGCcGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 37338 0.66 0.759066
Target:  5'- uGCCGAgaUCAUCGcGAAgaucuacgaacuGACCGGCaucGACCu -3'
miRNA:   3'- cCGGCU--GGUAGU-CUU------------CUGGCCG---CUGG- -5'
19440 5' -56.2 NC_004685.1 + 38379 0.66 0.759066
Target:  5'- cGCCGACgAUgcCGGAGacgaGCUGGuCGACCa -3'
miRNA:   3'- cCGGCUGgUA--GUCUUc---UGGCC-GCUGG- -5'
19440 5' -56.2 NC_004685.1 + 17855 0.66 0.759066
Target:  5'- aGGUCGAugcCCAUCuugcGGAacuugguguucAGGCCGGgGACg -3'
miRNA:   3'- -CCGGCU---GGUAG----UCU-----------UCUGGCCgCUGg -5'
19440 5' -56.2 NC_004685.1 + 2947 0.66 0.759066
Target:  5'- cGGCCGcaaGCCcaagCAGuGGACCcGCGugCc -3'
miRNA:   3'- -CCGGC---UGGua--GUCuUCUGGcCGCugG- -5'
19440 5' -56.2 NC_004685.1 + 3246 0.66 0.759066
Target:  5'- gGGCCgGACCAUCGGcgccgguuuGGGuuCGGUGAa- -3'
miRNA:   3'- -CCGG-CUGGUAGUC---------UUCugGCCGCUgg -5'
19440 5' -56.2 NC_004685.1 + 39838 0.66 0.756094
Target:  5'- cGGCCGA-CAUCAcGgcGGCCaucgacgcgcugguGGCGuCCa -3'
miRNA:   3'- -CCGGCUgGUAGU-CuuCUGG--------------CCGCuGG- -5'
19440 5' -56.2 NC_004685.1 + 9357 0.66 0.749118
Target:  5'- uGuuGACgCAUCAcgcGggGuuUCGGCGGCCc -3'
miRNA:   3'- cCggCUG-GUAGU---CuuCu-GGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 24762 0.66 0.749118
Target:  5'- cGGCaacuCGAUCGUC-GAGGAccCCGGC-ACCg -3'
miRNA:   3'- -CCG----GCUGGUAGuCUUCU--GGCCGcUGG- -5'
19440 5' -56.2 NC_004685.1 + 57354 0.66 0.749118
Target:  5'- uGCgGGCCAUCgccgAGAAGG-CGGCaGCCc -3'
miRNA:   3'- cCGgCUGGUAG----UCUUCUgGCCGcUGG- -5'
19440 5' -56.2 NC_004685.1 + 14482 0.66 0.749118
Target:  5'- uGGCCG-CCu--GGuccGACCugGGCGACCg -3'
miRNA:   3'- -CCGGCuGGuagUCuu-CUGG--CCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 3030 0.66 0.749118
Target:  5'- uGCgGGCCAUCAcGGAGccucgucucCUGGCGGCa -3'
miRNA:   3'- cCGgCUGGUAGU-CUUCu--------GGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 4109 0.66 0.739059
Target:  5'- uGCCGACauagcccuCGUCAGGugugGGAUCGGCcaguucuccgacGACCu -3'
miRNA:   3'- cCGGCUG--------GUAGUCU----UCUGGCCG------------CUGG- -5'
19440 5' -56.2 NC_004685.1 + 68451 0.66 0.739059
Target:  5'- gGGCCG-CCAgucc--GAUgGGCGGCCg -3'
miRNA:   3'- -CCGGCuGGUagucuuCUGgCCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.