miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19440 5' -56.2 NC_004685.1 + 75 0.68 0.666416
Target:  5'- -cCCGG-CAUCGGggGgggguGCCGGgGGCCu -3'
miRNA:   3'- ccGGCUgGUAGUCuuC-----UGGCCgCUGG- -5'
19440 5' -56.2 NC_004685.1 + 532 0.66 0.778591
Target:  5'- cGCCGACC-UCAcc-GACCG-CGGCUg -3'
miRNA:   3'- cCGGCUGGuAGUcuuCUGGCcGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 1837 0.76 0.246511
Target:  5'- uGUCGACCAUCGGGA---CGGUGACCa -3'
miRNA:   3'- cCGGCUGGUAGUCUUcugGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 1864 0.66 0.765959
Target:  5'- cGGCuuCGGCCAgguugaggauggcgUCGGucAGGCCG-CGGCCg -3'
miRNA:   3'- -CCG--GCUGGU--------------AGUCu-UCUGGCcGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 2510 0.68 0.65584
Target:  5'- -uUCGAUCGUCAuGAcuucucccgagGGACCgggGGCGACCa -3'
miRNA:   3'- ccGGCUGGUAGU-CU-----------UCUGG---CCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 2535 0.73 0.387123
Target:  5'- uGGaCCGcGCCGUCgaacAGGccACCGGCGGCCg -3'
miRNA:   3'- -CC-GGC-UGGUAG----UCUucUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 2947 0.66 0.759066
Target:  5'- cGGCCGcaaGCCcaagCAGuGGACCcGCGugCc -3'
miRNA:   3'- -CCGGC---UGGua--GUCuUCUGGcCGCugG- -5'
19440 5' -56.2 NC_004685.1 + 3030 0.66 0.749118
Target:  5'- uGCgGGCCAUCAcGGAGccucgucucCUGGCGGCa -3'
miRNA:   3'- cCGgCUGGUAGU-CUUCu--------GGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 3071 0.67 0.676962
Target:  5'- cGCCGacgcaccgcGCCAUCu--GGACCGaacgcugguGCGACCg -3'
miRNA:   3'- cCGGC---------UGGUAGucuUCUGGC---------CGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 3246 0.66 0.759066
Target:  5'- gGGCCgGACCAUCGGcgccgguuuGGGuuCGGUGAa- -3'
miRNA:   3'- -CCGG-CUGGUAGUC---------UUCugGCCGCUgg -5'
19440 5' -56.2 NC_004685.1 + 3397 0.68 0.624027
Target:  5'- cGCgGACCAgcgcuUCcGgcGACCaGCGGCCg -3'
miRNA:   3'- cCGgCUGGU-----AGuCuuCUGGcCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 3842 0.7 0.550403
Target:  5'- cGCCGACugCAUCGcuGAGGggaucgccaACUGGCGGCCc -3'
miRNA:   3'- cCGGCUG--GUAGU--CUUC---------UGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 3999 0.68 0.634637
Target:  5'- aGCCGGCCcggugUAGucGACgGGCuGGCCu -3'
miRNA:   3'- cCGGCUGGua---GUCuuCUGgCCG-CUGG- -5'
19440 5' -56.2 NC_004685.1 + 4109 0.66 0.739059
Target:  5'- uGCCGACauagcccuCGUCAGGugugGGAUCGGCcaguucuccgacGACCu -3'
miRNA:   3'- cCGGCUG--------GUAGUCU----UCUGGCCG------------CUGG- -5'
19440 5' -56.2 NC_004685.1 + 4233 0.68 0.65584
Target:  5'- cGCCGAggUCGUCGGAGaACUGGcCGAUCc -3'
miRNA:   3'- cCGGCU--GGUAGUCUUcUGGCC-GCUGG- -5'
19440 5' -56.2 NC_004685.1 + 4394 0.67 0.676962
Target:  5'- aGGCCcGCCGagucucaaccUCAagucGAGACUGaGCGACCg -3'
miRNA:   3'- -CCGGcUGGU----------AGUc---UUCUGGC-CGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 4518 0.69 0.58174
Target:  5'- cGGCCuGACgcgaaccaagcuCAUCcgcgcGgcGACCGGCGACUa -3'
miRNA:   3'- -CCGG-CUG------------GUAGu----CuuCUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 5255 0.72 0.441268
Target:  5'- gGGCUgcaaGACCAUCAccGAGGuCCGGCGGu- -3'
miRNA:   3'- -CCGG----CUGGUAGU--CUUCuGGCCGCUgg -5'
19440 5' -56.2 NC_004685.1 + 6527 0.67 0.687468
Target:  5'- uGGUCGA-CAUCA--AGACCGGCcaGCCc -3'
miRNA:   3'- -CCGGCUgGUAGUcuUCUGGCCGc-UGG- -5'
19440 5' -56.2 NC_004685.1 + 6655 0.67 0.68642
Target:  5'- cGCgGuGCCAUCGGugacgcgcugcgcAAGGCCGG-GGCCa -3'
miRNA:   3'- cCGgC-UGGUAGUC-------------UUCUGGCCgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.