miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19440 5' -56.2 NC_004685.1 + 40575 0.71 0.479655
Target:  5'- uGUCGACCAcCu--GGGCCGGCGcgGCCg -3'
miRNA:   3'- cCGGCUGGUaGucuUCUGGCCGC--UGG- -5'
19440 5' -56.2 NC_004685.1 + 26442 0.72 0.412748
Target:  5'- -uCCGACgGUCAcGAGACCGGCGuggugcuGCCc -3'
miRNA:   3'- ccGGCUGgUAGUcUUCUGGCCGC-------UGG- -5'
19440 5' -56.2 NC_004685.1 + 38258 0.72 0.422738
Target:  5'- cGGCgaGGCCAUUgAGAAG-CUGGuCGACCa -3'
miRNA:   3'- -CCGg-CUGGUAG-UCUUCuGGCC-GCUGG- -5'
19440 5' -56.2 NC_004685.1 + 18772 0.72 0.422738
Target:  5'- uGGCCGuggcGCgCAUCugaccgccGAGGACCgcgcGGCGACCg -3'
miRNA:   3'- -CCGGC----UG-GUAGu-------CUUCUGG----CCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 5255 0.72 0.441268
Target:  5'- gGGCUgcaaGACCAUCAccGAGGuCCGGCGGu- -3'
miRNA:   3'- -CCGG----CUGGUAGU--CUUCuGGCCGCUgg -5'
19440 5' -56.2 NC_004685.1 + 25590 0.72 0.441268
Target:  5'- aGCCGGCCGuguUCAGGuucuGGAuggucgucCCGGcCGACCg -3'
miRNA:   3'- cCGGCUGGU---AGUCU----UCU--------GGCC-GCUGG- -5'
19440 5' -56.2 NC_004685.1 + 8675 0.72 0.441268
Target:  5'- uGCUGGCCGUCGauucaccccGAGGGCCGcGCGuACUg -3'
miRNA:   3'- cCGGCUGGUAGU---------CUUCUGGC-CGC-UGG- -5'
19440 5' -56.2 NC_004685.1 + 66678 0.72 0.441268
Target:  5'- cGGCgGgAUUGUCGGuGGACCGGCGgaaaGCCa -3'
miRNA:   3'- -CCGgC-UGGUAGUCuUCUGGCCGC----UGG- -5'
19440 5' -56.2 NC_004685.1 + 44715 0.71 0.469901
Target:  5'- cGGCCGcuguucaucACCGUguGcGGcACCGGCGugCc -3'
miRNA:   3'- -CCGGC---------UGGUAguCuUC-UGGCCGCugG- -5'
19440 5' -56.2 NC_004685.1 + 46765 0.72 0.39584
Target:  5'- uGCUGGCCGUCAucggccGggGAUUGGUGGCg -3'
miRNA:   3'- cCGGCUGGUAGU------CuuCUGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 38737 0.72 0.39584
Target:  5'- aGCCGAUCGcCGcuGAGGCgGGCGACCu -3'
miRNA:   3'- cCGGCUGGUaGUc-UUCUGgCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 34801 0.73 0.370072
Target:  5'- cGUCGGCCugauggUAG-AGACCGGCGGCa -3'
miRNA:   3'- cCGGCUGGua----GUCuUCUGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 10190 0.8 0.14274
Target:  5'- uGGCCGGgucgaggUCAacUCGGAGGACUGGCGGCUg -3'
miRNA:   3'- -CCGGCU-------GGU--AGUCUUCUGGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 53564 0.8 0.143122
Target:  5'- cGCCGACCAUCuu--GACCGGCacaguGACCa -3'
miRNA:   3'- cCGGCUGGUAGucuuCUGGCCG-----CUGG- -5'
19440 5' -56.2 NC_004685.1 + 1837 0.76 0.246511
Target:  5'- uGUCGACCAUCGGGA---CGGUGACCa -3'
miRNA:   3'- cCGGCUGGUAGUCUUcugGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 60991 0.75 0.299874
Target:  5'- gGGUCGACCAcgCAGGccguGCCGGCGAUg -3'
miRNA:   3'- -CCGGCUGGUa-GUCUuc--UGGCCGCUGg -5'
19440 5' -56.2 NC_004685.1 + 53227 0.74 0.33754
Target:  5'- uGCCGcACCAUCAGGuAGGuggUGGCGGCCu -3'
miRNA:   3'- cCGGC-UGGUAGUCU-UCUg--GCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 41973 0.73 0.370072
Target:  5'- aGGaCGGCCGcgUGGAAGAgguguggcCCGGCGGCCg -3'
miRNA:   3'- -CCgGCUGGUa-GUCUUCU--------GGCCGCUGG- -5'
19440 5' -56.2 NC_004685.1 + 12665 0.73 0.370072
Target:  5'- cGGCCG-CUGUCGGAGGugCGG--GCCg -3'
miRNA:   3'- -CCGGCuGGUAGUCUUCugGCCgcUGG- -5'
19440 5' -56.2 NC_004685.1 + 27361 0.73 0.370072
Target:  5'- cGGCaucuuCCGUCuuGAGGCCGGCGGCa -3'
miRNA:   3'- -CCGgcu--GGUAGucUUCUGGCCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.