miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19442 3' -61.3 NC_004685.1 + 21869 1.13 0.000192
Target:  5'- cCCGAGCCCAAGCCCGAGGCUGAGCCCg -3'
miRNA:   3'- -GGCUCGGGUUCGGGCUCCGACUCGGG- -5'
19442 3' -61.3 NC_004685.1 + 21894 0.91 0.009344
Target:  5'- nCGAGgCUGAGCCCGAGGCUGAGCCa -3'
miRNA:   3'- gGCUCgGGUUCGGGCUCCGACUCGGg -5'
19442 3' -61.3 NC_004685.1 + 57547 0.8 0.05388
Target:  5'- gCCGAGCgaaGAGCCCGAGGUgGAGaCCCg -3'
miRNA:   3'- -GGCUCGgg-UUCGGGCUCCGaCUC-GGG- -5'
19442 3' -61.3 NC_004685.1 + 4043 0.79 0.067035
Target:  5'- aCCGcGCCCGAGCCUGAGccGCUGAggGUCCa -3'
miRNA:   3'- -GGCuCGGGUUCGGGCUC--CGACU--CGGG- -5'
19442 3' -61.3 NC_004685.1 + 36632 0.78 0.076777
Target:  5'- gCCGGuGUgCAGGCCC-AGGCUGAGCCg -3'
miRNA:   3'- -GGCU-CGgGUUCGGGcUCCGACUCGGg -5'
19442 3' -61.3 NC_004685.1 + 23331 0.77 0.087866
Target:  5'- aUGAGCCUgagguccugGAGUCUGAGGCcgagGAGCCCg -3'
miRNA:   3'- gGCUCGGG---------UUCGGGCUCCGa---CUCGGG- -5'
19442 3' -61.3 NC_004685.1 + 25201 0.74 0.153107
Target:  5'- -aGGGCCagucacuGCCC-AGGCUGAGCCUa -3'
miRNA:   3'- ggCUCGGguu----CGGGcUCCGACUCGGG- -5'
19442 3' -61.3 NC_004685.1 + 6685 0.73 0.183238
Target:  5'- gCCGGGgCCAaggAGCCCGAGG-UGGGCg- -3'
miRNA:   3'- -GGCUCgGGU---UCGGGCUCCgACUCGgg -5'
19442 3' -61.3 NC_004685.1 + 28057 0.73 0.187948
Target:  5'- gCGGG-CCAAGgCUGAGGCUGAGgUCg -3'
miRNA:   3'- gGCUCgGGUUCgGGCUCCGACUCgGG- -5'
19442 3' -61.3 NC_004685.1 + 34361 0.73 0.187948
Target:  5'- gCCGAucccGCCgAAGCCUGcGGCUGGaCCCg -3'
miRNA:   3'- -GGCU----CGGgUUCGGGCuCCGACUcGGG- -5'
19442 3' -61.3 NC_004685.1 + 15811 0.73 0.187948
Target:  5'- gCCGAGCCCcaaCUCGGGGU--GGCCCa -3'
miRNA:   3'- -GGCUCGGGuucGGGCUCCGacUCGGG- -5'
19442 3' -61.3 NC_004685.1 + 21954 0.72 0.202722
Target:  5'- cUCGGGCUUggGCUCG-GGCUuGGGCUCg -3'
miRNA:   3'- -GGCUCGGGuuCGGGCuCCGA-CUCGGG- -5'
19442 3' -61.3 NC_004685.1 + 23815 0.72 0.205796
Target:  5'- aCUGAGCCgcuggacgacgaaGAGCCCGAGacccCUGAGCCg -3'
miRNA:   3'- -GGCUCGGg------------UUCGGGCUCc---GACUCGGg -5'
19442 3' -61.3 NC_004685.1 + 9301 0.72 0.213124
Target:  5'- cCCGAGCCUaacagcggcggcGAGCuuGAGGCauugGAGCa- -3'
miRNA:   3'- -GGCUCGGG------------UUCGggCUCCGa---CUCGgg -5'
19442 3' -61.3 NC_004685.1 + 25914 0.72 0.213124
Target:  5'- aCGGGCgaGAGCCCGcGGcGCUGAccgGCCCa -3'
miRNA:   3'- gGCUCGggUUCGGGC-UC-CGACU---CGGG- -5'
19442 3' -61.3 NC_004685.1 + 1774 0.72 0.218494
Target:  5'- aUGGGCU--GGCCCGAcGGCUGGGUCa -3'
miRNA:   3'- gGCUCGGguUCGGGCU-CCGACUCGGg -5'
19442 3' -61.3 NC_004685.1 + 8468 0.71 0.229583
Target:  5'- aCGGGUgcggCCGcGCuggCCGAGGCUGAGCgCCg -3'
miRNA:   3'- gGCUCG----GGUuCG---GGCUCCGACUCG-GG- -5'
19442 3' -61.3 NC_004685.1 + 4118 0.71 0.247102
Target:  5'- cCCGAaCCCGAGCCgCGcgaAGGCc-AGCCCg -3'
miRNA:   3'- -GGCUcGGGUUCGG-GC---UCCGacUCGGG- -5'
19442 3' -61.3 NC_004685.1 + 56529 0.7 0.271515
Target:  5'- uUGGGUUC-AGCCgGAGGCUGuacgagauacuucAGCCCg -3'
miRNA:   3'- gGCUCGGGuUCGGgCUCCGAC-------------UCGGG- -5'
19442 3' -61.3 NC_004685.1 + 47784 0.7 0.288162
Target:  5'- aCGGGCgUAAGCCCaAGGCccgucaguuggaccuUGAGCuCCg -3'
miRNA:   3'- gGCUCGgGUUCGGGcUCCG---------------ACUCG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.