miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19442 3' -61.3 NC_004685.1 + 43675 0.67 0.427696
Target:  5'- uCCG-GCCCGcGCUCGGcgaccGGCUGcgcacccuGCCCg -3'
miRNA:   3'- -GGCuCGGGUuCGGGCU-----CCGACu-------CGGG- -5'
19442 3' -61.3 NC_004685.1 + 14083 0.67 0.427696
Target:  5'- gCCGAGgcauCCCAGGCgUCGAcGuGCUGAuGUCCg -3'
miRNA:   3'- -GGCUC----GGGUUCG-GGCU-C-CGACU-CGGG- -5'
19442 3' -61.3 NC_004685.1 + 48017 0.67 0.427696
Target:  5'- gUCGAGCgUGAccuCCaCGGGGCUGuacGGCCCa -3'
miRNA:   3'- -GGCUCGgGUUc--GG-GCUCCGAC---UCGGG- -5'
19442 3' -61.3 NC_004685.1 + 11884 0.67 0.427696
Target:  5'- gUCGAGCUCAucgAGaCCGAGGgUGAcaGCCa -3'
miRNA:   3'- -GGCUCGGGU---UCgGGCUCCgACU--CGGg -5'
19442 3' -61.3 NC_004685.1 + 34592 0.67 0.418754
Target:  5'- gCCGAGCgCCuGG-CCGAGGaaGAGUCg -3'
miRNA:   3'- -GGCUCG-GGuUCgGGCUCCgaCUCGGg -5'
19442 3' -61.3 NC_004685.1 + 33564 0.67 0.409927
Target:  5'- aCCGGugguGCCCAGGUCCcaaguGGC--GGCCCa -3'
miRNA:   3'- -GGCU----CGGGUUCGGGcu---CCGacUCGGG- -5'
19442 3' -61.3 NC_004685.1 + 31297 0.67 0.401216
Target:  5'- aCCGGGgaaCCCAAgGCCCGccuGGU--AGCCCu -3'
miRNA:   3'- -GGCUC---GGGUU-CGGGCu--CCGacUCGGG- -5'
19442 3' -61.3 NC_004685.1 + 55356 0.67 0.401216
Target:  5'- gCUGcGCgCCGAGgCCGAGGCgaagGAggcggcgaaaGCCCa -3'
miRNA:   3'- -GGCuCG-GGUUCgGGCUCCGa---CU----------CGGG- -5'
19442 3' -61.3 NC_004685.1 + 31327 0.68 0.392624
Target:  5'- gCCGA--CCAGGCCCGA-GCcGAcGCCCu -3'
miRNA:   3'- -GGCUcgGGUUCGGGCUcCGaCU-CGGG- -5'
19442 3' -61.3 NC_004685.1 + 58435 0.68 0.375804
Target:  5'- aCCGGcgacccGCCCcgacaCCGAGGCUGuGCCg -3'
miRNA:   3'- -GGCU------CGGGuucg-GGCUCCGACuCGGg -5'
19442 3' -61.3 NC_004685.1 + 16952 0.68 0.359476
Target:  5'- -aGGGUCU--GCCUGAGGCUGgcGGCCa -3'
miRNA:   3'- ggCUCGGGuuCGGGCUCCGAC--UCGGg -5'
19442 3' -61.3 NC_004685.1 + 499 0.68 0.354676
Target:  5'- cCCGAGCUCGccgccgccuacgagcAGCUCGAGGC--GGCUg -3'
miRNA:   3'- -GGCUCGGGU---------------UCGGGCUCCGacUCGGg -5'
19442 3' -61.3 NC_004685.1 + 21935 0.68 0.351501
Target:  5'- gCCGAGCCUGaggcgaccccucGGCuCCGAGGCgcgcAGCUa -3'
miRNA:   3'- -GGCUCGGGU------------UCG-GGCUCCGac--UCGGg -5'
19442 3' -61.3 NC_004685.1 + 55103 0.68 0.351501
Target:  5'- aCCGAGggUGAcCCCGAGGCgGuGCCCg -3'
miRNA:   3'- -GGCUCggGUUcGGGCUCCGaCuCGGG- -5'
19442 3' -61.3 NC_004685.1 + 1040 0.68 0.351501
Target:  5'- cCCGAGCaCCAgucgguguugAGCCgCG-GGUUGGuguuGCCCg -3'
miRNA:   3'- -GGCUCG-GGU----------UCGG-GCuCCGACU----CGGG- -5'
19442 3' -61.3 NC_004685.1 + 17061 0.69 0.335929
Target:  5'- cCUGAGgCCAugucagAGCUgGAGcGCUG-GCCCa -3'
miRNA:   3'- -GGCUCgGGU------UCGGgCUC-CGACuCGGG- -5'
19442 3' -61.3 NC_004685.1 + 1039 0.69 0.328334
Target:  5'- aCCGuGCCCcgcauccGCCCGcAGGaCUGcGGCCUg -3'
miRNA:   3'- -GGCuCGGGuu-----CGGGC-UCC-GAC-UCGGG- -5'
19442 3' -61.3 NC_004685.1 + 25497 0.69 0.328334
Target:  5'- aCGAcuGCCCGuGCCCGaAGGCUccgugcGGCCUg -3'
miRNA:   3'- gGCU--CGGGUuCGGGC-UCCGAc-----UCGGG- -5'
19442 3' -61.3 NC_004685.1 + 32165 0.69 0.320866
Target:  5'- -aGGGCaCCAccaucGGCuCCGAGGUgGAGCCg -3'
miRNA:   3'- ggCUCG-GGU-----UCG-GGCUCCGaCUCGGg -5'
19442 3' -61.3 NC_004685.1 + 55886 0.69 0.320866
Target:  5'- -gGAGgCCAAcguccGCaCCGAGGC-GAGCCUg -3'
miRNA:   3'- ggCUCgGGUU-----CG-GGCUCCGaCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.