miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19447 3' -66.3 NC_004685.1 + 20036 0.66 0.297462
Target:  5'- uCGCGCGCCaGCUCCaGCGuCUCGUc- -3'
miRNA:   3'- uGUGCGCGG-CGGGGcCGCuGGGCGac -5'
19447 3' -66.3 NC_004685.1 + 8575 0.66 0.297462
Target:  5'- uCGgGUGCCG-CCCGGC-ACgCUGCUGg -3'
miRNA:   3'- uGUgCGCGGCgGGGCCGcUG-GGCGAC- -5'
19447 3' -66.3 NC_004685.1 + 49790 0.66 0.293411
Target:  5'- gGCcCGCGCCcggugguucGCCaCCcgucugcgcgagucgGGCGACCCGCc- -3'
miRNA:   3'- -UGuGCGCGG---------CGG-GG---------------CCGCUGGGCGac -5'
19447 3' -66.3 NC_004685.1 + 9801 0.66 0.290734
Target:  5'- cCGCG-GCCGCCgCGGCGAggugguCCCGg-- -3'
miRNA:   3'- uGUGCgCGGCGGgGCCGCU------GGGCgac -5'
19447 3' -66.3 NC_004685.1 + 28796 0.66 0.290734
Target:  5'- -aGCGaCGCCuacgagaagcaGgCCCGcGCGGCCCGCg- -3'
miRNA:   3'- ugUGC-GCGG-----------CgGGGC-CGCUGGGCGac -5'
19447 3' -66.3 NC_004685.1 + 19202 0.66 0.290734
Target:  5'- cGCACGCGCCGaccagCUCGacGCGcACUgGCUGa -3'
miRNA:   3'- -UGUGCGCGGCg----GGGC--CGC-UGGgCGAC- -5'
19447 3' -66.3 NC_004685.1 + 35493 0.66 0.284124
Target:  5'- cAC-CGUGCCGgUcgggCCGGUGAUCCGCg- -3'
miRNA:   3'- -UGuGCGCGGCgG----GGCCGCUGGGCGac -5'
19447 3' -66.3 NC_004685.1 + 69492 0.66 0.284124
Target:  5'- cACucguCGCGCCGaaaCCCGcGCGcACgCCGCg- -3'
miRNA:   3'- -UGu---GCGCGGCg--GGGC-CGC-UG-GGCGac -5'
19447 3' -66.3 NC_004685.1 + 33411 0.66 0.277635
Target:  5'- cGC-CGCGCCGCagcgcaCCGGCcuGCUCGCc- -3'
miRNA:   3'- -UGuGCGCGGCGg-----GGCCGc-UGGGCGac -5'
19447 3' -66.3 NC_004685.1 + 66993 0.66 0.277635
Target:  5'- cCACcCGCacauCGCCgaGGaCGACCCGCUGu -3'
miRNA:   3'- uGUGcGCG----GCGGggCC-GCUGGGCGAC- -5'
19447 3' -66.3 NC_004685.1 + 37978 0.66 0.271264
Target:  5'- gACACGaCGaCCGUCUCGccgacGCGGCUgGCUGa -3'
miRNA:   3'- -UGUGC-GC-GGCGGGGC-----CGCUGGgCGAC- -5'
19447 3' -66.3 NC_004685.1 + 28909 0.66 0.265011
Target:  5'- uGCugGCGUCGCgggCCGcGCGgGCCUGCUu -3'
miRNA:   3'- -UGugCGCGGCGg--GGC-CGC-UGGGCGAc -5'
19447 3' -66.3 NC_004685.1 + 16150 0.66 0.264392
Target:  5'- gGC-CGCGCCGCgCCaGGUcgucaucGGCCUGCUu -3'
miRNA:   3'- -UGuGCGCGGCGgGG-CCG-------CUGGGCGAc -5'
19447 3' -66.3 NC_004685.1 + 3393 0.66 0.258875
Target:  5'- aGCGCGCGgaccagCGCuUCCGGCGACCaGCg- -3'
miRNA:   3'- -UGUGCGCg-----GCG-GGGCCGCUGGgCGac -5'
19447 3' -66.3 NC_004685.1 + 42562 0.66 0.258875
Target:  5'- aGCugGUGCCGCugCCCaGGCcguuggcACCCGCa- -3'
miRNA:   3'- -UGugCGCGGCG--GGG-CCGc------UGGGCGac -5'
19447 3' -66.3 NC_004685.1 + 4494 0.66 0.258875
Target:  5'- --cCGCGCgGCgaCCGGCGACUacaagGCUGg -3'
miRNA:   3'- uguGCGCGgCGg-GGCCGCUGGg----CGAC- -5'
19447 3' -66.3 NC_004685.1 + 67032 0.67 0.252856
Target:  5'- cUACGgGCUGCCC--GCGACCaaCGCUGa -3'
miRNA:   3'- uGUGCgCGGCGGGgcCGCUGG--GCGAC- -5'
19447 3' -66.3 NC_004685.1 + 50835 0.67 0.252856
Target:  5'- gGC-CGCGCUGUgCCUGGCG-CUCGCg- -3'
miRNA:   3'- -UGuGCGCGGCG-GGGCCGCuGGGCGac -5'
19447 3' -66.3 NC_004685.1 + 12807 0.67 0.252856
Target:  5'- aGCGCGUGCaccgGCUUCGGCGGCUCagGCUu -3'
miRNA:   3'- -UGUGCGCGg---CGGGGCCGCUGGG--CGAc -5'
19447 3' -66.3 NC_004685.1 + 46836 0.67 0.246952
Target:  5'- gGCGCGUgGCUGCaauucaCCGGCGAUCUGUc- -3'
miRNA:   3'- -UGUGCG-CGGCGg-----GGCCGCUGGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.