miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19447 5' -54.9 NC_004685.1 + 64590 0.66 0.735343
Target:  5'- gUCGGCuGGGUGGUGucccGCAAcGGAAAAg -3'
miRNA:   3'- aAGUCG-UCCACCGCc---CGUU-CCUUUUa -5'
19447 5' -54.9 NC_004685.1 + 7535 0.66 0.702722
Target:  5'- gUCAGCcacGGcGGCggGGGCGGGGAGu-- -3'
miRNA:   3'- aAGUCGu--CCaCCG--CCCGUUCCUUuua -5'
19447 5' -54.9 NC_004685.1 + 37209 0.67 0.647077
Target:  5'- -gCAGCAGcUGcGCGGGCAGcuguuGGAGAGc -3'
miRNA:   3'- aaGUCGUCcAC-CGCCCGUU-----CCUUUUa -5'
19447 5' -54.9 NC_004685.1 + 65575 0.68 0.579929
Target:  5'- ---cGguGGUGGCGugcGGCGAGGAGu-- -3'
miRNA:   3'- aaguCguCCACCGC---CCGUUCCUUuua -5'
19447 5' -54.9 NC_004685.1 + 30828 0.69 0.557806
Target:  5'- gUUCAGCAGGcucagUGGCaGGuCGAGGAc--- -3'
miRNA:   3'- -AAGUCGUCC-----ACCGcCC-GUUCCUuuua -5'
19447 5' -54.9 NC_004685.1 + 693 0.69 0.546833
Target:  5'- cUUCGGCagcguGGGUGGCGGcGgGAGGguGAUc -3'
miRNA:   3'- -AAGUCG-----UCCACCGCC-CgUUCCuuUUA- -5'
19447 5' -54.9 NC_004685.1 + 42030 0.69 0.546833
Target:  5'- -aCGGCaacgAGGUGGCGcGCGAGGAu--- -3'
miRNA:   3'- aaGUCG----UCCACCGCcCGUUCCUuuua -5'
19447 5' -54.9 NC_004685.1 + 30015 0.69 0.546833
Target:  5'- aUCGGCAuGGUGG-GcGGCAAGGGc--- -3'
miRNA:   3'- aAGUCGU-CCACCgC-CCGUUCCUuuua -5'
19447 5' -54.9 NC_004685.1 + 45966 0.69 0.525102
Target:  5'- --gAGCAGGUGcGCGGGCuGGuGAAc-- -3'
miRNA:   3'- aagUCGUCCAC-CGCCCGuUC-CUUuua -5'
19447 5' -54.9 NC_004685.1 + 48478 0.73 0.324603
Target:  5'- -aCAGCuguGGUGGCGcGGCGAGGcGAu- -3'
miRNA:   3'- aaGUCGu--CCACCGC-CCGUUCCuUUua -5'
19447 5' -54.9 NC_004685.1 + 47546 0.75 0.225906
Target:  5'- -gCGGUgccAGGUGGCGGGCAGGGu---- -3'
miRNA:   3'- aaGUCG---UCCACCGCCCGUUCCuuuua -5'
19447 5' -54.9 NC_004685.1 + 23979 1.03 0.002556
Target:  5'- aUUCAGCAGGUGGCGGGCAAGGAAAAUc -3'
miRNA:   3'- -AAGUCGUCCACCGCCCGUUCCUUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.