miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19448 3' -53.1 NC_004685.1 + 21297 0.66 0.901044
Target:  5'- gGCG-CGGCUCUCGC--CAGCAccuccACCGg -3'
miRNA:   3'- -UGCaGCUGAGGGCGaaGUUGU-----UGGCg -5'
19448 3' -53.1 NC_004685.1 + 16610 0.66 0.901044
Target:  5'- cGCGaCGACUacaCCCgGCcgUCGcugguggagcguGCAACCGCa -3'
miRNA:   3'- -UGCaGCUGA---GGG-CGa-AGU------------UGUUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 34844 0.66 0.901044
Target:  5'- uACGUCGACUCguUCGaCUacgaguUCGAgGACgGCg -3'
miRNA:   3'- -UGCAGCUGAG--GGC-GA------AGUUgUUGgCG- -5'
19448 3' -53.1 NC_004685.1 + 64643 0.66 0.896925
Target:  5'- cGCG-CGACggCCGUUUCAagguguugccggaauAUGACCGCc -3'
miRNA:   3'- -UGCaGCUGagGGCGAAGU---------------UGUUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 42481 0.66 0.894127
Target:  5'- aGCGgcacCaGCUUCaGCUUCAcgGCAGCCGCc -3'
miRNA:   3'- -UGCa---GcUGAGGgCGAAGU--UGUUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 14464 0.66 0.894127
Target:  5'- -aGUCG--UCCaGCUUCGACcuGGCCGCc -3'
miRNA:   3'- ugCAGCugAGGgCGAAGUUG--UUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 52579 0.66 0.894127
Target:  5'- cCGUCGGCgccgaaCCGCUgCGACucGACCaGCu -3'
miRNA:   3'- uGCAGCUGag----GGCGAaGUUG--UUGG-CG- -5'
19448 3' -53.1 NC_004685.1 + 66662 0.66 0.894127
Target:  5'- cCGagGGCcaaCCGCUUCcGCAggGCCGCc -3'
miRNA:   3'- uGCagCUGag-GGCGAAGuUGU--UGGCG- -5'
19448 3' -53.1 NC_004685.1 + 19187 0.66 0.894127
Target:  5'- gGCGUCGAgCUgaUCGCgaaauccgUCGACcggAACCGCg -3'
miRNA:   3'- -UGCAGCU-GAg-GGCGa-------AGUUG---UUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 48210 0.66 0.893421
Target:  5'- cGCGguaugucUCGACgCCCGUgUCGAacacCGGCCGCc -3'
miRNA:   3'- -UGC-------AGCUGaGGGCGaAGUU----GUUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 43668 0.66 0.886949
Target:  5'- gACGUucucCGGC-CCgCGC-UCGGCGACCGg -3'
miRNA:   3'- -UGCA----GCUGaGG-GCGaAGUUGUUGGCg -5'
19448 3' -53.1 NC_004685.1 + 57591 0.66 0.886949
Target:  5'- -gGUCGAUUuccacggccaCCUGC-UCAcCGGCCGCg -3'
miRNA:   3'- ugCAGCUGA----------GGGCGaAGUuGUUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 9147 0.66 0.879516
Target:  5'- aACGUCGcggguGCgcgaCCCGUccagggUGACGACCGCg -3'
miRNA:   3'- -UGCAGC-----UGa---GGGCGaa----GUUGUUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 57750 0.66 0.879516
Target:  5'- aACGcCGACgugaagCUCGCggUCAACGcggcCCGCg -3'
miRNA:   3'- -UGCaGCUGa-----GGGCGa-AGUUGUu---GGCG- -5'
19448 3' -53.1 NC_004685.1 + 21362 0.66 0.879516
Target:  5'- gGCGUCGGCgaUCUgGCaggCGGCGgguGCCGUg -3'
miRNA:   3'- -UGCAGCUG--AGGgCGaa-GUUGU---UGGCG- -5'
19448 3' -53.1 NC_004685.1 + 32280 0.66 0.879516
Target:  5'- cGCGggCGG-UCCUGgUggcgCGGCGACCGCa -3'
miRNA:   3'- -UGCa-GCUgAGGGCgAa---GUUGUUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 26080 0.66 0.879516
Target:  5'- uACGccCGACugUCCCGCgagcUCAccaagguCGGCCGCg -3'
miRNA:   3'- -UGCa-GCUG--AGGGCGa---AGUu------GUUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 213 0.66 0.871833
Target:  5'- cGCGUcaucaaaggCGACUgCCCGCgUUUGACGAaCGCg -3'
miRNA:   3'- -UGCA---------GCUGA-GGGCG-AAGUUGUUgGCG- -5'
19448 3' -53.1 NC_004685.1 + 9482 0.66 0.871833
Target:  5'- cACGgCGACgccaUCCgGC-UCAGC-GCCGCg -3'
miRNA:   3'- -UGCaGCUG----AGGgCGaAGUUGuUGGCG- -5'
19448 3' -53.1 NC_004685.1 + 9899 0.66 0.871833
Target:  5'- cGCGg-GACcacCUCGCcgCGGCGGCCGCg -3'
miRNA:   3'- -UGCagCUGa--GGGCGaaGUUGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.