miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19448 5' -54.1 NC_004685.1 + 31125 0.65 0.865134
Target:  5'- uCGGCGaacGUCUUGGUCUGCuuguCGaacgccucgaacucGCCGCg -3'
miRNA:   3'- -GCCGU---UAGGACUAGGCGcu--GU--------------UGGCG- -5'
19448 5' -54.1 NC_004685.1 + 49746 0.66 0.859505
Target:  5'- uCGGCGccaucGUCgUGGcaguagCCGCGAUAcacCCGCg -3'
miRNA:   3'- -GCCGU-----UAGgACUa-----GGCGCUGUu--GGCG- -5'
19448 5' -54.1 NC_004685.1 + 59545 0.66 0.859505
Target:  5'- aCGGCGAg-CUGA-CCGUcaucGACuGGCCGCu -3'
miRNA:   3'- -GCCGUUagGACUaGGCG----CUG-UUGGCG- -5'
19448 5' -54.1 NC_004685.1 + 47146 0.66 0.859505
Target:  5'- gGGUGAUCCcggUGggCUGCGuC-GCCGCu -3'
miRNA:   3'- gCCGUUAGG---ACuaGGCGCuGuUGGCG- -5'
19448 5' -54.1 NC_004685.1 + 47174 0.66 0.859505
Target:  5'- aCGGCGAcgaUGA-UgGUGGCGACCGCc -3'
miRNA:   3'- -GCCGUUaggACUaGgCGCUGUUGGCG- -5'
19448 5' -54.1 NC_004685.1 + 45833 0.66 0.859505
Target:  5'- uCGGCAccGUCgUGG-CCGacCGGCucACCGCg -3'
miRNA:   3'- -GCCGU--UAGgACUaGGC--GCUGu-UGGCG- -5'
19448 5' -54.1 NC_004685.1 + 9812 0.66 0.858692
Target:  5'- nCGGCGAgg-UGGUCC-CGGCGcacaccuACCGCa -3'
miRNA:   3'- -GCCGUUaggACUAGGcGCUGU-------UGGCG- -5'
19448 5' -54.1 NC_004685.1 + 9546 0.66 0.851269
Target:  5'- gGGCAG-CgUGAUacucggcggcaCCaGCGACAACgCGCg -3'
miRNA:   3'- gCCGUUaGgACUA-----------GG-CGCUGUUG-GCG- -5'
19448 5' -54.1 NC_004685.1 + 18867 0.66 0.851269
Target:  5'- uCGGCGGUCa-GAUgCGCGccACGGCCa- -3'
miRNA:   3'- -GCCGUUAGgaCUAgGCGC--UGUUGGcg -5'
19448 5' -54.1 NC_004685.1 + 34114 0.66 0.851269
Target:  5'- uCGGCcc-CCUGGagCGCGggcaggugguGCAGCUGCg -3'
miRNA:   3'- -GCCGuuaGGACUagGCGC----------UGUUGGCG- -5'
19448 5' -54.1 NC_004685.1 + 59267 0.66 0.851269
Target:  5'- gGGCGAaCgUGGUCUGCaccuccugugagGACAggcccACCGCg -3'
miRNA:   3'- gCCGUUaGgACUAGGCG------------CUGU-----UGGCG- -5'
19448 5' -54.1 NC_004685.1 + 18899 0.66 0.851269
Target:  5'- uCGGCAucguggCCgacgcGcgCCGCGACGG-CGCg -3'
miRNA:   3'- -GCCGUua----GGa----CuaGGCGCUGUUgGCG- -5'
19448 5' -54.1 NC_004685.1 + 19413 0.66 0.851269
Target:  5'- gGGCcaagCCUGGUgucCCGCuACAAgCGCg -3'
miRNA:   3'- gCCGuua-GGACUA---GGCGcUGUUgGCG- -5'
19448 5' -54.1 NC_004685.1 + 22526 0.66 0.851269
Target:  5'- uGGCucaUCUGGUCCaccauCGACAgcACCGCc -3'
miRNA:   3'- gCCGuuaGGACUAGGc----GCUGU--UGGCG- -5'
19448 5' -54.1 NC_004685.1 + 45649 0.66 0.84281
Target:  5'- gGGCAGcacagcgcccUCCguagUGGcCCGCGugAucACCGCg -3'
miRNA:   3'- gCCGUU----------AGG----ACUaGGCGCugU--UGGCG- -5'
19448 5' -54.1 NC_004685.1 + 38900 0.66 0.84281
Target:  5'- aCGGCAggUCU---UCGCuGCGACCGCg -3'
miRNA:   3'- -GCCGUuaGGAcuaGGCGcUGUUGGCG- -5'
19448 5' -54.1 NC_004685.1 + 8964 0.66 0.84281
Target:  5'- uGGCGAUCCUGcggauggggCCGagGGuCAGCCGg -3'
miRNA:   3'- gCCGUUAGGACua-------GGCg-CU-GUUGGCg -5'
19448 5' -54.1 NC_004685.1 + 13294 0.66 0.834137
Target:  5'- gGGCugcUCCgauucgGGUUCGgGACGACgGCc -3'
miRNA:   3'- gCCGuu-AGGa-----CUAGGCgCUGUUGgCG- -5'
19448 5' -54.1 NC_004685.1 + 5767 0.66 0.834137
Target:  5'- cCGGcCGAgcaCCUGGUUgGCGAguuCCGCa -3'
miRNA:   3'- -GCC-GUUa--GGACUAGgCGCUguuGGCG- -5'
19448 5' -54.1 NC_004685.1 + 26489 0.66 0.834137
Target:  5'- gGGCGA-CCUGAagCGCccguACCGCa -3'
miRNA:   3'- gCCGUUaGGACUagGCGcuguUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.