miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19449 3' -58.9 NC_004685.1 + 61771 0.66 0.644227
Target:  5'- cUGAGGuucugGGCGcgacguACCUGgGCGACGGgCu -3'
miRNA:   3'- -ACUCCug---CCGU------UGGGCgCGCUGCUgG- -5'
19449 3' -58.9 NC_004685.1 + 41433 0.66 0.644227
Target:  5'- gGAcuGGCGGUGACaCCGaacgGCGGCGACa -3'
miRNA:   3'- aCUc-CUGCCGUUG-GGCg---CGCUGCUGg -5'
19449 3' -58.9 NC_004685.1 + 9904 0.66 0.644227
Target:  5'- gUGuGcGCGGgAccACCuCGcCGCGGCGGCCg -3'
miRNA:   3'- -ACuCcUGCCgU--UGG-GC-GCGCUGCUGG- -5'
19449 3' -58.9 NC_004685.1 + 32697 0.66 0.644227
Target:  5'- aGGGGGCgGGCcgguGCCgGUGUGcuGCGugCg -3'
miRNA:   3'- aCUCCUG-CCGu---UGGgCGCGC--UGCugG- -5'
19449 3' -58.9 NC_004685.1 + 59631 0.66 0.644227
Target:  5'- cGAcGGGCuGGCAGgcacCCCGCGCaACGuggcacagGCCa -3'
miRNA:   3'- aCU-CCUG-CCGUU----GGGCGCGcUGC--------UGG- -5'
19449 3' -58.9 NC_004685.1 + 35275 0.66 0.643182
Target:  5'- gGGGuGACGGUgagcgugGACCUGUggcugccggGCGACGAgCa -3'
miRNA:   3'- aCUC-CUGCCG-------UUGGGCG---------CGCUGCUgG- -5'
19449 3' -58.9 NC_004685.1 + 18301 0.66 0.633779
Target:  5'- cGAGGugauugucagUGGCGACggCCGCaGUGGCGACg -3'
miRNA:   3'- aCUCCu---------GCCGUUG--GGCG-CGCUGCUGg -5'
19449 3' -58.9 NC_004685.1 + 44754 0.66 0.633779
Target:  5'- --uGGugGGUcgGACCCGaCGCcGAC-ACCg -3'
miRNA:   3'- acuCCugCCG--UUGGGC-GCG-CUGcUGG- -5'
19449 3' -58.9 NC_004685.1 + 2356 0.66 0.633779
Target:  5'- cGAGGuugGGCAcCCCGggccaGCGuuCGGCCa -3'
miRNA:   3'- aCUCCug-CCGUuGGGCg----CGCu-GCUGG- -5'
19449 3' -58.9 NC_004685.1 + 47473 0.66 0.633779
Target:  5'- aGGGGuccucguacucgACGGUgacguugaGGCCUuuggaucgcaGCGCGugGACCa -3'
miRNA:   3'- aCUCC------------UGCCG--------UUGGG----------CGCGCugCUGG- -5'
19449 3' -58.9 NC_004685.1 + 33877 0.66 0.633779
Target:  5'- cUGaAGGuGCGGUcgcugucgccGACaCCGCGaCGACGcACCa -3'
miRNA:   3'- -AC-UCC-UGCCG----------UUG-GGCGC-GCUGC-UGG- -5'
19449 3' -58.9 NC_004685.1 + 42025 0.66 0.633779
Target:  5'- cGcuGACGGCAACgagguggCGCGCGAgGAUUg -3'
miRNA:   3'- aCucCUGCCGUUGg------GCGCGCUgCUGG- -5'
19449 3' -58.9 NC_004685.1 + 52794 0.66 0.633779
Target:  5'- cGAgGGugGGCAGaCCUGCcGCuGCaugGACCa -3'
miRNA:   3'- aCU-CCugCCGUU-GGGCG-CGcUG---CUGG- -5'
19449 3' -58.9 NC_004685.1 + 11861 0.66 0.633779
Target:  5'- gGA-GugGGCGGCCCGCcguccuugccGgGAUGcACCa -3'
miRNA:   3'- aCUcCugCCGUUGGGCG----------CgCUGC-UGG- -5'
19449 3' -58.9 NC_004685.1 + 66130 0.66 0.627509
Target:  5'- gUGGGcaucGGCGGUGACCUGUaccgccaggacuaccGCGACG-CCg -3'
miRNA:   3'- -ACUC----CUGCCGUUGGGCG---------------CGCUGCuGG- -5'
19449 3' -58.9 NC_004685.1 + 13245 0.66 0.623331
Target:  5'- gGGGGGCuaucgacguaGGCGGCCCucCGCGuCGcCCg -3'
miRNA:   3'- aCUCCUG----------CCGUUGGGc-GCGCuGCuGG- -5'
19449 3' -58.9 NC_004685.1 + 58705 0.66 0.623331
Target:  5'- gGuGGccGCGGCGACaCUgcgcagcaacggGCGCGACG-CCg -3'
miRNA:   3'- aCuCC--UGCCGUUG-GG------------CGCGCUGCuGG- -5'
19449 3' -58.9 NC_004685.1 + 48676 0.66 0.623331
Target:  5'- cUGAucGCGGUAcCgCCGCGCGAUcACCa -3'
miRNA:   3'- -ACUccUGCCGUuG-GGCGCGCUGcUGG- -5'
19449 3' -58.9 NC_004685.1 + 60886 0.66 0.612889
Target:  5'- aGcAGGuCGGCGGCgCGUaucuCGAUGGCCg -3'
miRNA:   3'- aC-UCCuGCCGUUGgGCGc---GCUGCUGG- -5'
19449 3' -58.9 NC_004685.1 + 23922 0.66 0.612889
Target:  5'- cGAGGuguacCGcGCAGCgaacacgcgCCGCcCGGCGACCc -3'
miRNA:   3'- aCUCCu----GC-CGUUG---------GGCGcGCUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.