miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19449 5' -57.3 NC_004685.1 + 61405 0.66 0.697925
Target:  5'- cGGGuCGGUGAUgUGGGaucGcACCGACCUg -3'
miRNA:   3'- aCCU-GCCACUG-ACCCa--C-UGGUUGGGg -5'
19449 5' -57.3 NC_004685.1 + 21442 0.66 0.676962
Target:  5'- cGGAC-GUG-CUGGGcGACUucgguCCCCu -3'
miRNA:   3'- aCCUGcCACuGACCCaCUGGuu---GGGG- -5'
19449 5' -57.3 NC_004685.1 + 3682 0.66 0.676962
Target:  5'- -cGGCGGcuuugGugUGGGUGGCgCAGCguuugaCCCg -3'
miRNA:   3'- acCUGCCa----CugACCCACUG-GUUG------GGG- -5'
19449 5' -57.3 NC_004685.1 + 2458 0.66 0.666416
Target:  5'- cUGGccgaACGcUGGCccgGGGUGcCCAACCUCg -3'
miRNA:   3'- -ACC----UGCcACUGa--CCCACuGGUUGGGG- -5'
19449 5' -57.3 NC_004685.1 + 64207 0.66 0.666416
Target:  5'- gUGGcgagcCGGUGAgCUGGGcGGauGACCCCg -3'
miRNA:   3'- -ACCu----GCCACU-GACCCaCUggUUGGGG- -5'
19449 5' -57.3 NC_004685.1 + 25114 0.66 0.666416
Target:  5'- cUGGGCaGUGACUGGcccuACaggaaAGCCCCg -3'
miRNA:   3'- -ACCUGcCACUGACCcac-UGg----UUGGGG- -5'
19449 5' -57.3 NC_004685.1 + 23252 0.66 0.665359
Target:  5'- cUGGAUGGccUGAUcgagccggUGGGUGuucggaaACCGaacACCCCg -3'
miRNA:   3'- -ACCUGCC--ACUG--------ACCCAC-------UGGU---UGGGG- -5'
19449 5' -57.3 NC_004685.1 + 37662 0.67 0.645244
Target:  5'- aUGGACGuucgacuccaguGUGACUcgcaccgccGGGUcGACCGGCUCg -3'
miRNA:   3'- -ACCUGC------------CACUGA---------CCCA-CUGGUUGGGg -5'
19449 5' -57.3 NC_004685.1 + 44814 0.67 0.645244
Target:  5'- cGGugccgcacACGGUGAUgaacagcggccGGGUGuCCGGCCCg -3'
miRNA:   3'- aCC--------UGCCACUGa----------CCCACuGGUUGGGg -5'
19449 5' -57.3 NC_004685.1 + 40206 0.67 0.634637
Target:  5'- cGGAUGGUGAUcuUGucgccguUGGCCAcCCCCg -3'
miRNA:   3'- aCCUGCCACUG--ACcc-----ACUGGUuGGGG- -5'
19449 5' -57.3 NC_004685.1 + 43932 0.67 0.624027
Target:  5'- cUGGGCGcgauGUGAauCUGGGcGAgCGGCCCg -3'
miRNA:   3'- -ACCUGC----CACU--GACCCaCUgGUUGGGg -5'
19449 5' -57.3 NC_004685.1 + 34419 0.67 0.602837
Target:  5'- gUGGAgaaCGGUGACgcGGacacgcguguuGUGGCCGcgggcACCCCg -3'
miRNA:   3'- -ACCU---GCCACUGa-CC-----------CACUGGU-----UGGGG- -5'
19449 5' -57.3 NC_004685.1 + 37511 0.67 0.602837
Target:  5'- cUGGcgaGGUGuggcgcGCUGuGGUGGCCGcguucauccaGCCCCu -3'
miRNA:   3'- -ACCug-CCAC------UGAC-CCACUGGU----------UGGGG- -5'
19449 5' -57.3 NC_004685.1 + 68639 0.68 0.58174
Target:  5'- gGGGCGcccgcaucgGACUGGccggGGCCAcaGCCCCg -3'
miRNA:   3'- aCCUGCca-------CUGACCca--CUGGU--UGGGG- -5'
19449 5' -57.3 NC_004685.1 + 66883 0.69 0.5298
Target:  5'- cGGGugaccUGGUGAC-GGuGUGGCCAugCCg -3'
miRNA:   3'- aCCU-----GCCACUGaCC-CACUGGUugGGg -5'
19449 5' -57.3 NC_004685.1 + 5816 0.69 0.509487
Target:  5'- -cGGCGaGUGuCgGGGUGACUGGCaCCCg -3'
miRNA:   3'- acCUGC-CACuGaCCCACUGGUUG-GGG- -5'
19449 5' -57.3 NC_004685.1 + 700 0.69 0.489507
Target:  5'- aGcGugGGUGGCggcgggaGGGUGAucCCGACgCCg -3'
miRNA:   3'- aC-CugCCACUGa------CCCACU--GGUUGgGG- -5'
19449 5' -57.3 NC_004685.1 + 51422 0.7 0.469901
Target:  5'- cGGcCGGUGGCgaUGaGGUGACgAucagcgucGCCCCu -3'
miRNA:   3'- aCCuGCCACUG--AC-CCACUGgU--------UGGGG- -5'
19449 5' -57.3 NC_004685.1 + 55115 0.7 0.450703
Target:  5'- gUGGACuGGUcGACcgaGGGUGACCccgaggcgGugCCCg -3'
miRNA:   3'- -ACCUG-CCA-CUGa--CCCACUGG--------UugGGG- -5'
19449 5' -57.3 NC_004685.1 + 52129 0.71 0.421824
Target:  5'- aGGugGcGUGGCUGGccaagauGUcGACCGgggccGCCCCg -3'
miRNA:   3'- aCCugC-CACUGACC-------CA-CUGGU-----UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.