miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19451 5' -53 NC_004685.1 + 39142 0.66 0.90247
Target:  5'- cUCGuACAACG-AGGUcaCCUGGGUGCgCGg -3'
miRNA:   3'- cAGC-UGUUGCuUCCA--GGGCUCAUG-GU- -5'
19451 5' -53 NC_004685.1 + 61859 0.66 0.893465
Target:  5'- aGUCGgcuguaGCAGCGGaccgcaccccguugAccGGcCCCGAGUGCCAc -3'
miRNA:   3'- -CAGC------UGUUGCU--------------U--CCaGGGCUCAUGGU- -5'
19451 5' -53 NC_004685.1 + 51367 0.66 0.888432
Target:  5'- cUCGcACAGCGAGGGUgUCGAGguggAgCGg -3'
miRNA:   3'- cAGC-UGUUGCUUCCAgGGCUCa---UgGU- -5'
19451 5' -53 NC_004685.1 + 65442 0.66 0.873362
Target:  5'- cGUCGGgggcCAGCGcaucGAGGUCCCcgacGGGUAUCGc -3'
miRNA:   3'- -CAGCU----GUUGC----UUCCAGGG----CUCAUGGU- -5'
19451 5' -53 NC_004685.1 + 60352 0.66 0.865453
Target:  5'- cGUCGcCGGCGAgucGGGUUCCGAccuuCCAg -3'
miRNA:   3'- -CAGCuGUUGCU---UCCAGGGCUcau-GGU- -5'
19451 5' -53 NC_004685.1 + 44424 0.66 0.865453
Target:  5'- aUCGGCGGCGAguauguagggcuGGG-CCUGGGggacGCCAg -3'
miRNA:   3'- cAGCUGUUGCU------------UCCaGGGCUCa---UGGU- -5'
19451 5' -53 NC_004685.1 + 16939 0.67 0.857304
Target:  5'- uUCGACuccuuCGAGGGUcugCCUGAGgcuggcgGCCAg -3'
miRNA:   3'- cAGCUGuu---GCUUCCA---GGGCUCa------UGGU- -5'
19451 5' -53 NC_004685.1 + 20805 0.67 0.822462
Target:  5'- cGUCGGCAcCG-AGGUC--GAGUACCGu -3'
miRNA:   3'- -CAGCUGUuGCuUCCAGggCUCAUGGU- -5'
19451 5' -53 NC_004685.1 + 55108 0.68 0.803817
Target:  5'- gGUCGAC--CGAGGGUgacCCCGAggcgGUGCCc -3'
miRNA:   3'- -CAGCUGuuGCUUCCA---GGGCU----CAUGGu -5'
19451 5' -53 NC_004685.1 + 2207 0.68 0.794222
Target:  5'- uUCGACccacaggcCGGauuGGGUgCCGGGUGCCAg -3'
miRNA:   3'- cAGCUGuu------GCU---UCCAgGGCUCAUGGU- -5'
19451 5' -53 NC_004685.1 + 30266 0.68 0.794222
Target:  5'- gGUCG-CAGCGAuagccGGUCCCGcGaUACCu -3'
miRNA:   3'- -CAGCuGUUGCUu----CCAGGGCuC-AUGGu -5'
19451 5' -53 NC_004685.1 + 61249 0.68 0.784461
Target:  5'- -cCGACAucauCGAGGG-CCUGAGccUGCCGg -3'
miRNA:   3'- caGCUGUu---GCUUCCaGGGCUC--AUGGU- -5'
19451 5' -53 NC_004685.1 + 50047 0.68 0.784461
Target:  5'- -gUGGCGGCuGGAcGGcCCCGAGUACUg -3'
miRNA:   3'- caGCUGUUG-CUU-CCaGGGCUCAUGGu -5'
19451 5' -53 NC_004685.1 + 23826 0.68 0.774543
Target:  5'- --gGACGACGAAGaG-CCCGAG-ACCc -3'
miRNA:   3'- cagCUGUUGCUUC-CaGGGCUCaUGGu -5'
19451 5' -53 NC_004685.1 + 46181 0.69 0.754281
Target:  5'- uUCGGCGG-GAcAGGUCCCGGGUuuGCUg -3'
miRNA:   3'- cAGCUGUUgCU-UCCAGGGCUCA--UGGu -5'
19451 5' -53 NC_004685.1 + 23722 0.73 0.517788
Target:  5'- -gCGACAGuauCGAAGGUCCCcacccaguGGUGCCAg -3'
miRNA:   3'- caGCUGUU---GCUUCCAGGGc-------UCAUGGU- -5'
19451 5' -53 NC_004685.1 + 57314 0.76 0.367786
Target:  5'- gGUCGACAACGAGGGg-CCGAccguggacgcggccgGUGCCGc -3'
miRNA:   3'- -CAGCUGUUGCUUCCagGGCU---------------CAUGGU- -5'
19451 5' -53 NC_004685.1 + 24816 1.09 0.002336
Target:  5'- cGUCGACAACGAAGGUCCCGAGUACCAg -3'
miRNA:   3'- -CAGCUGUUGCUUCCAGGGCUCAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.