Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19452 | 5' | -59 | NC_004685.1 | + | 35531 | 0.66 | 0.585556 |
Target: 5'- aGCAGCUGGGcGUcgaCUaCGUGGGGccGUg -3' miRNA: 3'- -CGUCGGCCC-CGaaaGA-GCACCCCa-CA- -5' |
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19452 | 5' | -59 | NC_004685.1 | + | 59920 | 0.66 | 0.56461 |
Target: 5'- cCAGCUGacugcGGGUcUUCUUG-GGGGUGUu -3' miRNA: 3'- cGUCGGC-----CCCGaAAGAGCaCCCCACA- -5' |
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19452 | 5' | -59 | NC_004685.1 | + | 49743 | 0.67 | 0.513245 |
Target: 5'- --cGCCGGGGCggaUCaUCGcGGGGUu- -3' miRNA: 3'- cguCGGCCCCGaa-AG-AGCaCCCCAca -5' |
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19452 | 5' | -59 | NC_004685.1 | + | 33737 | 0.69 | 0.381884 |
Target: 5'- cGCAGCCGGauGCcgUUCUCaccgGGGGUGc -3' miRNA: 3'- -CGUCGGCCc-CGa-AAGAGca--CCCCACa -5' |
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19452 | 5' | -59 | NC_004685.1 | + | 25222 | 0.7 | 0.348665 |
Target: 5'- aGCAGaCCGGGGCUUUCcUGUaGGGc-- -3' miRNA: 3'- -CGUC-GGCCCCGAAAGaGCAcCCCaca -5' |
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19452 | 5' | -59 | NC_004685.1 | + | 47369 | 0.73 | 0.242955 |
Target: 5'- cGCAGaCCGaGGuGCUgcguacgCUCGUGcGGGUGUa -3' miRNA: 3'- -CGUC-GGC-CC-CGAaa-----GAGCAC-CCCACA- -5' |
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19452 | 5' | -59 | NC_004685.1 | + | 25159 | 1.08 | 0.000676 |
Target: 5'- gGCAGCCGGGGCUUUCUCGUGGGGUGUu -3' miRNA: 3'- -CGUCGGCCCCGAAAGAGCACCCCACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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