miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19453 3' -53.9 NC_004685.1 + 6257 0.66 0.828775
Target:  5'- cACCCUGGACGA-GGCGug--CAUCGa -3'
miRNA:   3'- -UGGGACUUGUUgCCGCuccaGUAGUa -5'
19453 3' -53.9 NC_004685.1 + 9473 0.66 0.81959
Target:  5'- uGCCCgcGAuuguCGGCGGCGucGGGUCGcUCAa -3'
miRNA:   3'- -UGGGa-CUu---GUUGCCGC--UCCAGU-AGUa -5'
19453 3' -53.9 NC_004685.1 + 48190 0.66 0.810206
Target:  5'- aGCUC-GGGCGACGGCuGGGUCggCAc -3'
miRNA:   3'- -UGGGaCUUGUUGCCGcUCCAGuaGUa -5'
19453 3' -53.9 NC_004685.1 + 8485 0.67 0.760675
Target:  5'- gGCCgaggCUGAGCGcCGGUGGGGUCcgCu- -3'
miRNA:   3'- -UGG----GACUUGUuGCCGCUCCAGuaGua -5'
19453 3' -53.9 NC_004685.1 + 31259 0.67 0.739853
Target:  5'- cGCCCagGAccggcGCGGCGGCGAGcGUCG-CGa -3'
miRNA:   3'- -UGGGa-CU-----UGUUGCCGCUC-CAGUaGUa -5'
19453 3' -53.9 NC_004685.1 + 17686 0.67 0.739853
Target:  5'- cACCCcGAGC-ACGuGCugucugcgGAGGUCAUCAa -3'
miRNA:   3'- -UGGGaCUUGuUGC-CG--------CUCCAGUAGUa -5'
19453 3' -53.9 NC_004685.1 + 18278 0.68 0.728208
Target:  5'- gACCaUUGGgcgggguACAGCGGCGAGGUgAUUGUc -3'
miRNA:   3'- -UGG-GACU-------UGUUGCCGCUCCAgUAGUA- -5'
19453 3' -53.9 NC_004685.1 + 53215 0.68 0.718592
Target:  5'- aGCCgaGcGACGACGGCGGcgugcuGGUCAUCc- -3'
miRNA:   3'- -UGGgaC-UUGUUGCCGCU------CCAGUAGua -5'
19453 3' -53.9 NC_004685.1 + 59560 0.68 0.696985
Target:  5'- cGCCCgagcUGucCAACGGCGAGcugaccGUCAUCGa -3'
miRNA:   3'- -UGGG----ACuuGUUGCCGCUC------CAGUAGUa -5'
19453 3' -53.9 NC_004685.1 + 38829 0.69 0.6531
Target:  5'- cGCCCgccuCAGCGGCGAucGGcUCAUCGa -3'
miRNA:   3'- -UGGGacuuGUUGCCGCU--CC-AGUAGUa -5'
19453 3' -53.9 NC_004685.1 + 39458 0.7 0.597874
Target:  5'- cGCgCCUGGguccaguuccgGCAAgaggugguCGGUGAGGUCAUCAg -3'
miRNA:   3'- -UG-GGACU-----------UGUU--------GCCGCUCCAGUAGUa -5'
19453 3' -53.9 NC_004685.1 + 13549 0.71 0.532644
Target:  5'- aGCUCUGAcgACGACGGCGAcaguccGGUCcUCGa -3'
miRNA:   3'- -UGGGACU--UGUUGCCGCU------CCAGuAGUa -5'
19453 3' -53.9 NC_004685.1 + 25881 0.77 0.258882
Target:  5'- cACCUcGAACAcgaaggccagcGCGGUGAGGUCGUCGa -3'
miRNA:   3'- -UGGGaCUUGU-----------UGCCGCUCCAGUAGUa -5'
19453 3' -53.9 NC_004685.1 + 26285 1.06 0.002591
Target:  5'- cACCCUGAACAACGGCGAGGUCAUCAUg -3'
miRNA:   3'- -UGGGACUUGUUGCCGCUCCAGUAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.