miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19453 5' -59.6 NC_004685.1 + 57905 0.67 0.495082
Target:  5'- uGCGCCgCG-CCUCGGcGAuggcUGCgugCAGCu -3'
miRNA:   3'- -CGUGGgGCuGGAGCC-CU----ACGa--GUCGc -5'
19453 5' -59.6 NC_004685.1 + 15721 0.67 0.485306
Target:  5'- cCACCCCGAgUU-GGG--GCUCGGCGc -3'
miRNA:   3'- cGUGGGGCUgGAgCCCuaCGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 35878 0.67 0.485306
Target:  5'- aGCGCCCCGuACaacaUCGagacGGUGUUCGGCu -3'
miRNA:   3'- -CGUGGGGC-UGg---AGCc---CUACGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 1822 0.67 0.475623
Target:  5'- cGCGCCgcgaucccaugUCGACCaUCGGGAcggugaccaGCUCGGCu -3'
miRNA:   3'- -CGUGG-----------GGCUGG-AGCCCUa--------CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 37840 0.67 0.475623
Target:  5'- cCACCaCGGCagcCGGGAUGCcCAGCa -3'
miRNA:   3'- cGUGGgGCUGga-GCCCUACGaGUCGc -5'
19453 5' -59.6 NC_004685.1 + 63297 0.67 0.47466
Target:  5'- -gGCCCCGcACUUCGGGcAgucgaugucacccUGC-CAGCGg -3'
miRNA:   3'- cgUGGGGC-UGGAGCCC-U-------------ACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 2451 0.68 0.456552
Target:  5'- -aACgCUGGCC-CGGGGUGCccaaccUCGGCGa -3'
miRNA:   3'- cgUGgGGCUGGaGCCCUACG------AGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 22039 0.68 0.456552
Target:  5'- cGCGCCUCGgaGCCggaGGGGUcgccucagGCUCGGCc -3'
miRNA:   3'- -CGUGGGGC--UGGag-CCCUA--------CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 64860 0.68 0.456552
Target:  5'- gGCACCCCGuggGCCgaGGagccgauucccGGUGUUCGGCGa -3'
miRNA:   3'- -CGUGGGGC---UGGagCC-----------CUACGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 40613 0.68 0.456552
Target:  5'- gGCACCaucuaCGACCU-GGuGAaGUUCGGCGa -3'
miRNA:   3'- -CGUGGg----GCUGGAgCC-CUaCGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 27053 0.68 0.447172
Target:  5'- uGC-CgCCCGGCCggGGGGUGUUCGGa- -3'
miRNA:   3'- -CGuG-GGGCUGGagCCCUACGAGUCgc -5'
19453 5' -59.6 NC_004685.1 + 23384 0.68 0.447172
Target:  5'- -uGgCCUGAgcuuuCCUCGGGGUGUUCGGUu -3'
miRNA:   3'- cgUgGGGCU-----GGAGCCCUACGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 60976 0.68 0.441595
Target:  5'- cGCACCUCgGugUUCGGGucgaccacgcaggccGUGC-CGGCGa -3'
miRNA:   3'- -CGUGGGG-CugGAGCCC---------------UACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 55265 0.68 0.428739
Target:  5'- uCGCCUCGGCCUCGGc--GCgCAGCu -3'
miRNA:   3'- cGUGGGGCUGGAGCCcuaCGaGUCGc -5'
19453 5' -59.6 NC_004685.1 + 23937 0.68 0.419692
Target:  5'- --uCUCCGG-CUCGGGcgGCUCAGgGg -3'
miRNA:   3'- cguGGGGCUgGAGCCCuaCGAGUCgC- -5'
19453 5' -59.6 NC_004685.1 + 6851 0.69 0.401951
Target:  5'- cCGCCgUGACCcCGGGugccccgGCUCAGCc -3'
miRNA:   3'- cGUGGgGCUGGaGCCCua-----CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 66577 0.69 0.401951
Target:  5'- cGCGCCCCGACCU-GGaGGUGU--GGUa -3'
miRNA:   3'- -CGUGGGGCUGGAgCC-CUACGagUCGc -5'
19453 5' -59.6 NC_004685.1 + 28914 0.69 0.393261
Target:  5'- aGgACUUCGACC-CGGGccGCUgGGCGg -3'
miRNA:   3'- -CgUGGGGCUGGaGCCCuaCGAgUCGC- -5'
19453 5' -59.6 NC_004685.1 + 14179 0.69 0.384693
Target:  5'- aGCACgUCGACgCcUGGGAUGcCUCGGCc -3'
miRNA:   3'- -CGUGgGGCUG-GaGCCCUAC-GAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 7769 0.7 0.342963
Target:  5'- cGCAgCCUGAauggcacUCUCGGGAUGCgcguucaucCAGCGc -3'
miRNA:   3'- -CGUgGGGCU-------GGAGCCCUACGa--------GUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.