miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19455 3' -58.3 NC_004685.1 + 43055 0.66 0.651527
Target:  5'- --gUCGGUGCgGCGgugcUCGCCGcGGUCGg -3'
miRNA:   3'- gugAGCCACG-CGC----AGCGGUcCUAGCg -5'
19455 3' -58.3 NC_004685.1 + 7377 0.66 0.651527
Target:  5'- uGCUCGuGaUGCGacaGgUGCCAGuGGUCGCc -3'
miRNA:   3'- gUGAGC-C-ACGCg--CaGCGGUC-CUAGCG- -5'
19455 3' -58.3 NC_004685.1 + 61846 0.66 0.640992
Target:  5'- gGCUCgGGUGCGCaGUCGgCuguagcagcGGAcCGCa -3'
miRNA:   3'- gUGAG-CCACGCG-CAGCgGu--------CCUaGCG- -5'
19455 3' -58.3 NC_004685.1 + 47288 0.66 0.640992
Target:  5'- cCGCggagCGGUgGCGUGUgGCCgAGGAgcgaGCc -3'
miRNA:   3'- -GUGa---GCCA-CGCGCAgCGG-UCCUag--CG- -5'
19455 3' -58.3 NC_004685.1 + 39078 0.66 0.640992
Target:  5'- uGCUCGGgGuCGCGguacgCGCCGccGUCGCc -3'
miRNA:   3'- gUGAGCCaC-GCGCa----GCGGUccUAGCG- -5'
19455 3' -58.3 NC_004685.1 + 12474 0.66 0.640992
Target:  5'- -cCUCGGUGCGgugcaCGaUCGCCGuacGGAUgcCGCu -3'
miRNA:   3'- guGAGCCACGC-----GC-AGCGGU---CCUA--GCG- -5'
19455 3' -58.3 NC_004685.1 + 20227 0.66 0.630448
Target:  5'- ---aCGGUGCGCGgaugaaggucUgGUuuCAGGGUCGCu -3'
miRNA:   3'- gugaGCCACGCGC----------AgCG--GUCCUAGCG- -5'
19455 3' -58.3 NC_004685.1 + 63949 0.66 0.630448
Target:  5'- gAUUCuGGUGCauuggcuguggGCGuuucgccucuaUCGCCGGGAUCuGCa -3'
miRNA:   3'- gUGAG-CCACG-----------CGC-----------AGCGGUCCUAG-CG- -5'
19455 3' -58.3 NC_004685.1 + 68227 0.66 0.619907
Target:  5'- uGCcCGcGUGCGCGaCGCgCGuGAUCGCu -3'
miRNA:   3'- gUGaGC-CACGCGCaGCG-GUcCUAGCG- -5'
19455 3' -58.3 NC_004685.1 + 52058 0.66 0.619907
Target:  5'- -cCUCGGgggugaGCGCGUCGUCGcGGAcuuUCaGCu -3'
miRNA:   3'- guGAGCCa-----CGCGCAGCGGU-CCU---AG-CG- -5'
19455 3' -58.3 NC_004685.1 + 67118 0.66 0.619907
Target:  5'- aCGCUCGGcgcgGCGCaGUgcaGCCuGGAggGCa -3'
miRNA:   3'- -GUGAGCCa---CGCG-CAg--CGGuCCUagCG- -5'
19455 3' -58.3 NC_004685.1 + 9143 0.66 0.619907
Target:  5'- uCGCg-GGUGCGCGaccCGuCCAGGGUgacgacCGCg -3'
miRNA:   3'- -GUGagCCACGCGCa--GC-GGUCCUA------GCG- -5'
19455 3' -58.3 NC_004685.1 + 13234 0.66 0.619907
Target:  5'- gACguaggCGGcccucCGCGUCGcCCGGGcgCGCa -3'
miRNA:   3'- gUGa----GCCac---GCGCAGC-GGUCCuaGCG- -5'
19455 3' -58.3 NC_004685.1 + 33245 0.66 0.619907
Target:  5'- cCAC-CGGUGUcgaagaacgacaGC-UCGCCAGGcuucuUCGCg -3'
miRNA:   3'- -GUGaGCCACG------------CGcAGCGGUCCu----AGCG- -5'
19455 3' -58.3 NC_004685.1 + 18047 0.66 0.619907
Target:  5'- cCACUCgGGUGCGCGgUUGCCGaug-UGCc -3'
miRNA:   3'- -GUGAG-CCACGCGC-AGCGGUccuaGCG- -5'
19455 3' -58.3 NC_004685.1 + 18521 0.66 0.609375
Target:  5'- gAUUCGGUGCGCGUcCGCaac---CGCg -3'
miRNA:   3'- gUGAGCCACGCGCA-GCGguccuaGCG- -5'
19455 3' -58.3 NC_004685.1 + 59839 0.66 0.606219
Target:  5'- uGCUCGGUGCGCGccUCGucucggcugaugauCCAGaacccgCGCa -3'
miRNA:   3'- gUGAGCCACGCGC--AGC--------------GGUCcua---GCG- -5'
19455 3' -58.3 NC_004685.1 + 33762 0.67 0.598862
Target:  5'- gACgUGGUGCGuCGUCGCgGGuGUCGg -3'
miRNA:   3'- gUGaGCCACGC-GCAGCGgUCcUAGCg -5'
19455 3' -58.3 NC_004685.1 + 29027 0.67 0.567507
Target:  5'- ---aCGGUGCG-GUCGCC-GcGUCGCa -3'
miRNA:   3'- gugaGCCACGCgCAGCGGuCcUAGCG- -5'
19455 3' -58.3 NC_004685.1 + 59482 0.67 0.566468
Target:  5'- aGCUCGGgcggcgGCGgGUUGCCAGcggacaggacgauGAUgGCc -3'
miRNA:   3'- gUGAGCCa-----CGCgCAGCGGUC-------------CUAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.