miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19455 5' -54 NC_004685.1 + 28038 0.66 0.851674
Target:  5'- gGGAGAAgaAgGCGAAgGC-GCGgGCCa -3'
miRNA:   3'- -CCUCUUgaUaCGCUU-CGaCGCgCGGc -5'
19455 5' -54 NC_004685.1 + 47237 0.66 0.851674
Target:  5'- -uGGAGCagGUGCaGAAGCagUGCGaCGCCu -3'
miRNA:   3'- ccUCUUGa-UACG-CUUCG--ACGC-GCGGc -5'
19455 5' -54 NC_004685.1 + 41481 0.66 0.843151
Target:  5'- cGAuGAGCg--GCGAGGUggaUGCGgUGCCGg -3'
miRNA:   3'- cCU-CUUGauaCGCUUCG---ACGC-GCGGC- -5'
19455 5' -54 NC_004685.1 + 33518 0.66 0.843151
Target:  5'- -aAGAugUcgGCGAgcaGGCcgGUGCGCUGc -3'
miRNA:   3'- ccUCUugAuaCGCU---UCGa-CGCGCGGC- -5'
19455 5' -54 NC_004685.1 + 1914 0.66 0.843151
Target:  5'- aGGucGAC-AUGgGAucGCgGCGCGCCGg -3'
miRNA:   3'- -CCucUUGaUACgCUu-CGaCGCGCGGC- -5'
19455 5' -54 NC_004685.1 + 20338 0.66 0.843151
Target:  5'- cGGAcGGCggcgGCGAAccGCUGCcCGCCGc -3'
miRNA:   3'- -CCUcUUGaua-CGCUU--CGACGcGCGGC- -5'
19455 5' -54 NC_004685.1 + 33334 0.66 0.834411
Target:  5'- aGGuGAAUgucugacugGUGAAGUUGC-CGCCGa -3'
miRNA:   3'- -CCuCUUGaua------CGCUUCGACGcGCGGC- -5'
19455 5' -54 NC_004685.1 + 51555 0.66 0.82546
Target:  5'- uGGAucGAGCUGU-CGucGGCUGgGCGCaCGg -3'
miRNA:   3'- -CCU--CUUGAUAcGCu-UCGACgCGCG-GC- -5'
19455 5' -54 NC_004685.1 + 15927 0.66 0.816309
Target:  5'- uGGGAcuuccaGCUcgGCGAAGCguucGUGCuGCCa -3'
miRNA:   3'- cCUCU------UGAuaCGCUUCGa---CGCG-CGGc -5'
19455 5' -54 NC_004685.1 + 24579 0.67 0.806967
Target:  5'- cGAGGACg--GCGGacccgAGC-GgGCGCCGg -3'
miRNA:   3'- cCUCUUGauaCGCU-----UCGaCgCGCGGC- -5'
19455 5' -54 NC_004685.1 + 19933 0.67 0.797445
Target:  5'- ---cGACUAUgGCGAcgagacgcuggAGCUGCGCGCg- -3'
miRNA:   3'- ccucUUGAUA-CGCU-----------UCGACGCGCGgc -5'
19455 5' -54 NC_004685.1 + 730 0.67 0.797445
Target:  5'- uGGAGAGCUgAUGUccgucGAauccaacauccGGCuacgggUGCGCGCCGc -3'
miRNA:   3'- -CCUCUUGA-UACG-----CU-----------UCG------ACGCGCGGC- -5'
19455 5' -54 NC_004685.1 + 16058 0.67 0.797445
Target:  5'- uGGGGuAGCcGU-CGGAGCcGUGCGCCa -3'
miRNA:   3'- -CCUC-UUGaUAcGCUUCGaCGCGCGGc -5'
19455 5' -54 NC_004685.1 + 17559 0.67 0.797445
Target:  5'- -cAGAuACUcgGCGucggcGGGCuUGCGCGCCa -3'
miRNA:   3'- ccUCU-UGAuaCGC-----UUCG-ACGCGCGGc -5'
19455 5' -54 NC_004685.1 + 61824 0.67 0.796483
Target:  5'- uGGAGAACUGcGCcuuccacGAGGCUcggGUGCGCa- -3'
miRNA:   3'- -CCUCUUGAUaCG-------CUUCGA---CGCGCGgc -5'
19455 5' -54 NC_004685.1 + 68276 0.67 0.787752
Target:  5'- aGGAGGugUucg-GAAGCcgaacagGCGCGCCGc -3'
miRNA:   3'- -CCUCUugAuacgCUUCGa------CGCGCGGC- -5'
19455 5' -54 NC_004685.1 + 9667 0.67 0.777899
Target:  5'- aGGAGAACacgucguUGgGGaucaGGUcGCGCGCCGu -3'
miRNA:   3'- -CCUCUUGau-----ACgCU----UCGaCGCGCGGC- -5'
19455 5' -54 NC_004685.1 + 12513 0.67 0.777899
Target:  5'- aGGAGccGCUGUGCac-GCUGCGC-CUGg -3'
miRNA:   3'- -CCUCu-UGAUACGcuuCGACGCGcGGC- -5'
19455 5' -54 NC_004685.1 + 63443 0.68 0.747493
Target:  5'- -uGGAACUGcGCcc-GCUGCGaCGCCGa -3'
miRNA:   3'- ccUCUUGAUaCGcuuCGACGC-GCGGC- -5'
19455 5' -54 NC_004685.1 + 33911 0.68 0.74439
Target:  5'- uGGAGucgggcaccggcGCUuUGUGGAGCUGCcacccgccacgguGCGCCGc -3'
miRNA:   3'- -CCUCu-----------UGAuACGCUUCGACG-------------CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.