miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19458 3' -54.2 NC_004685.1 + 1602 0.66 0.828202
Target:  5'- aGGGCGAGGAccGCcugcuGCGGgcacACGcCGu -3'
miRNA:   3'- -CCCGCUCCU--CGaauu-CGCCa---UGCaGC- -5'
19458 3' -54.2 NC_004685.1 + 49752 0.66 0.819202
Target:  5'- cGGGCGAcccgccGGGGCggaucaucGCGGgguuCGUCGc -3'
miRNA:   3'- -CCCGCU------CCUCGaauu----CGCCau--GCAGC- -5'
19458 3' -54.2 NC_004685.1 + 62620 0.67 0.809084
Target:  5'- cGGCGGGGuGGCcaucGCGGUGuccgagcCGUCGg -3'
miRNA:   3'- cCCGCUCC-UCGaauuCGCCAU-------GCAGC- -5'
19458 3' -54.2 NC_004685.1 + 54881 0.67 0.771552
Target:  5'- -cGCGAGGAGCgcAAGCGGguggugGCcUUGa -3'
miRNA:   3'- ccCGCUCCUCGaaUUCGCCa-----UGcAGC- -5'
19458 3' -54.2 NC_004685.1 + 26359 0.68 0.75854
Target:  5'- aGGGUGAGGGGggUGucGGCGaacacggagucguaGUugGUCGc -3'
miRNA:   3'- -CCCGCUCCUCgaAU--UCGC--------------CAugCAGC- -5'
19458 3' -54.2 NC_004685.1 + 22400 0.68 0.751445
Target:  5'- aGGaCGAGGccgcggacuGGCgguuGGCGGUGCuGUCGa -3'
miRNA:   3'- cCC-GCUCC---------UCGaau-UCGCCAUG-CAGC- -5'
19458 3' -54.2 NC_004685.1 + 6212 0.68 0.751445
Target:  5'- uGGU-AGGGGCUguuGgGGUugGUCGa -3'
miRNA:   3'- cCCGcUCCUCGAauuCgCCAugCAGC- -5'
19458 3' -54.2 NC_004685.1 + 6924 0.68 0.728788
Target:  5'- cGGCG-GGAGCcggugcgccugGGGCGGUGCGa-- -3'
miRNA:   3'- cCCGCuCCUCGaa---------UUCGCCAUGCagc -5'
19458 3' -54.2 NC_004685.1 + 26569 0.69 0.70991
Target:  5'- uGGGCGAGGAgaacuaugcgaaGCUgcgcgccGGCGGcaaGUCGg -3'
miRNA:   3'- -CCCGCUCCU------------CGAau-----UCGCCaugCAGC- -5'
19458 3' -54.2 NC_004685.1 + 2788 0.69 0.698251
Target:  5'- cGGGCGGGGuaguGGUgaacucgucgcacUUGAGCGugGCGUCGa -3'
miRNA:   3'- -CCCGCUCC----UCG-------------AAUUCGCcaUGCAGC- -5'
19458 3' -54.2 NC_004685.1 + 7519 0.69 0.677945
Target:  5'- gGGGCGGGGAGUgauacgcGCGGcGCGcUGg -3'
miRNA:   3'- -CCCGCUCCUCGaauu---CGCCaUGCaGC- -5'
19458 3' -54.2 NC_004685.1 + 67939 0.7 0.634783
Target:  5'- gGGGCGGGGAugacagGCgcc-GCGGUgaACGUCc -3'
miRNA:   3'- -CCCGCUCCU------CGaauuCGCCA--UGCAGc -5'
19458 3' -54.2 NC_004685.1 + 49343 0.7 0.634783
Target:  5'- cGGGCGAGGugugcgcGCUgauGGCGcUGCGuUCGg -3'
miRNA:   3'- -CCCGCUCCu------CGAau-UCGCcAUGC-AGC- -5'
19458 3' -54.2 NC_004685.1 + 54844 0.71 0.559489
Target:  5'- cGGGCGAcGcGGCgauGGCGGUGCGgCGu -3'
miRNA:   3'- -CCCGCU-CcUCGaauUCGCCAUGCaGC- -5'
19458 3' -54.2 NC_004685.1 + 10652 0.71 0.538365
Target:  5'- aGGGUGAGGGGCUgGAuCGucGCGUCGu -3'
miRNA:   3'- -CCCGCUCCUCGAaUUcGCcaUGCAGC- -5'
19458 3' -54.2 NC_004685.1 + 40176 0.73 0.428391
Target:  5'- uGGGUGAGGAcGC---GGCGGUGCagcaGUCGu -3'
miRNA:   3'- -CCCGCUCCU-CGaauUCGCCAUG----CAGC- -5'
19458 3' -54.2 NC_004685.1 + 27790 1.12 0.001231
Target:  5'- aGGGCGAGGAGCUUAAGCGGUACGUCGa -3'
miRNA:   3'- -CCCGCUCCUCGAAUUCGCCAUGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.