miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19458 5' -55.3 NC_004685.1 + 39936 0.66 0.809975
Target:  5'- aGCG-CGUCGAUGGcCGCCgugaugUCGGCCGg -3'
miRNA:   3'- gCGCuGCAGUUGUUcGCGG------AGCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 29117 0.66 0.809975
Target:  5'- uGCGACG-CGGCGAcCGCaccgUUGGCCAg -3'
miRNA:   3'- gCGCUGCaGUUGUUcGCGg---AGCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 7502 0.66 0.809975
Target:  5'- gCGCGGCG-CGcugGCcuGCGCcCUCGcACCGc -3'
miRNA:   3'- -GCGCUGCaGU---UGuuCGCG-GAGC-UGGU- -5'
19458 5' -55.3 NC_004685.1 + 38045 0.66 0.809975
Target:  5'- uGUGGuCGgccgCAACAAGCugauCCUCGACUg -3'
miRNA:   3'- gCGCU-GCa---GUUGUUCGc---GGAGCUGGu -5'
19458 5' -55.3 NC_004685.1 + 467 0.66 0.800645
Target:  5'- gGCGGCuGUCGAU--GCGCUggUGACCGc -3'
miRNA:   3'- gCGCUG-CAGUUGuuCGCGGa-GCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 43976 0.66 0.800645
Target:  5'- cCGCGugGUU-GCAGGgGCCgaccgCGACg- -3'
miRNA:   3'- -GCGCugCAGuUGUUCgCGGa----GCUGgu -5'
19458 5' -55.3 NC_004685.1 + 27993 0.66 0.800645
Target:  5'- aGCGACG-CAGCAuucuGGuCGUugagCUUGACCAg -3'
miRNA:   3'- gCGCUGCaGUUGU----UC-GCG----GAGCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 48466 0.66 0.800645
Target:  5'- gCGCGGCGa-GGCGAuGCGCUUCGucACCc -3'
miRNA:   3'- -GCGCUGCagUUGUU-CGCGGAGC--UGGu -5'
19458 5' -55.3 NC_004685.1 + 21493 0.66 0.799702
Target:  5'- aCGCGcauUCGACGGGCuucgaggccggccGCUUCGGCCAg -3'
miRNA:   3'- -GCGCugcAGUUGUUCG-------------CGGAGCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 25420 0.66 0.791145
Target:  5'- gGCGGCaa-GACGAuGCGCCaaGGCCAc -3'
miRNA:   3'- gCGCUGcagUUGUU-CGCGGagCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 66095 0.66 0.791145
Target:  5'- cCGCGACGcCGACGgcucGGCGCggguguaUCGcGCCGa -3'
miRNA:   3'- -GCGCUGCaGUUGU----UCGCGg------AGC-UGGU- -5'
19458 5' -55.3 NC_004685.1 + 33769 0.66 0.791145
Target:  5'- uGCGuCGUC-GCGGGUGUCggcgacagCGACCGc -3'
miRNA:   3'- gCGCuGCAGuUGUUCGCGGa-------GCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 18541 0.66 0.791145
Target:  5'- cCGCGAaGUCGAgccCGAGgGUCugUCGGCCAc -3'
miRNA:   3'- -GCGCUgCAGUU---GUUCgCGG--AGCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 14593 0.66 0.781487
Target:  5'- gGCG-CGUCAACAccacGGuCGCCcaggUCgGACCAg -3'
miRNA:   3'- gCGCuGCAGUUGU----UC-GCGG----AG-CUGGU- -5'
19458 5' -55.3 NC_004685.1 + 14059 0.66 0.781487
Target:  5'- -uCGGCGcCcGCGAGCGCggcUUCGGCCGa -3'
miRNA:   3'- gcGCUGCaGuUGUUCGCG---GAGCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 44852 0.66 0.781487
Target:  5'- gCGCGGUGUCGGCGucGgGUC-CGACCAc -3'
miRNA:   3'- -GCGCUGCAGUUGUu-CgCGGaGCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 57695 0.66 0.780513
Target:  5'- uCGCGGCcgGUgAGCAGGUGgCCguggaaaUCGACCGc -3'
miRNA:   3'- -GCGCUG--CAgUUGUUCGC-GG-------AGCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 34565 0.66 0.77856
Target:  5'- aCGUGAuCGUCAcaucggccaccuacGCAacggGGUGCCcgCGGCCAc -3'
miRNA:   3'- -GCGCU-GCAGU--------------UGU----UCGCGGa-GCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 61589 0.66 0.77168
Target:  5'- uCGCGACGcCGcCGGGCGg-UCGGCCGu -3'
miRNA:   3'- -GCGCUGCaGUuGUUCGCggAGCUGGU- -5'
19458 5' -55.3 NC_004685.1 + 58700 0.66 0.77168
Target:  5'- cCGCGGCGacacugcgcagCAACGGGCGCgaCG-CCGa -3'
miRNA:   3'- -GCGCUGCa----------GUUGUUCGCGgaGCuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.