miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19459 3' -54.8 NC_004685.1 + 9750 0.66 0.800639
Target:  5'- gAUGACCGGAucggggGUgGCGUCGCccuUCGGg -3'
miRNA:   3'- -UGCUGGUCUua----CGaCGCAGCG---AGCUg -5'
19459 3' -54.8 NC_004685.1 + 19330 0.66 0.800639
Target:  5'- uCGACCGGAcccucucGCUGUGggCGCgaCGACa -3'
miRNA:   3'- uGCUGGUCUua-----CGACGCa-GCGa-GCUG- -5'
19459 3' -54.8 NC_004685.1 + 31076 0.66 0.800639
Target:  5'- gGCGACaug---GgUGCGgCGCUCGACg -3'
miRNA:   3'- -UGCUGgucuuaCgACGCaGCGAGCUG- -5'
19459 3' -54.8 NC_004685.1 + 56411 0.66 0.791016
Target:  5'- --cGCCAGggUGCUGC-UCGacuUCGAg -3'
miRNA:   3'- ugcUGGUCuuACGACGcAGCg--AGCUg -5'
19459 3' -54.8 NC_004685.1 + 37889 0.66 0.78123
Target:  5'- uCGGCgAGAcgGUcgucGUGUCGCUCGGu -3'
miRNA:   3'- uGCUGgUCUuaCGa---CGCAGCGAGCUg -5'
19459 3' -54.8 NC_004685.1 + 2777 0.66 0.775284
Target:  5'- cUGACCucgaaucacacagcGggUGCUGCGgUCGCgaCGACc -3'
miRNA:   3'- uGCUGGu-------------CuuACGACGC-AGCGa-GCUG- -5'
19459 3' -54.8 NC_004685.1 + 43017 0.66 0.771292
Target:  5'- cCGAUgAGcuGAUGC-GCG-CGCUCGGCu -3'
miRNA:   3'- uGCUGgUC--UUACGaCGCaGCGAGCUG- -5'
19459 3' -54.8 NC_004685.1 + 61145 0.66 0.761212
Target:  5'- cACGACCAGGAUacGUgggGCuaUCGCggCGACa -3'
miRNA:   3'- -UGCUGGUCUUA--CGa--CGc-AGCGa-GCUG- -5'
19459 3' -54.8 NC_004685.1 + 48208 0.66 0.761212
Target:  5'- uACGACCuGGAc-CUGCGUaGCUCGGg -3'
miRNA:   3'- -UGCUGGuCUUacGACGCAgCGAGCUg -5'
19459 3' -54.8 NC_004685.1 + 666 0.66 0.760197
Target:  5'- gGCGGCCGGGucgGCaGCG-CGCauaaacuUCGGCa -3'
miRNA:   3'- -UGCUGGUCUua-CGaCGCaGCG-------AGCUG- -5'
19459 3' -54.8 NC_004685.1 + 6155 0.67 0.751003
Target:  5'- uCGGCCGGAAUcCagGCGUacCGCUCGGg -3'
miRNA:   3'- uGCUGGUCUUAcGa-CGCA--GCGAGCUg -5'
19459 3' -54.8 NC_004685.1 + 46545 0.67 0.751003
Target:  5'- cUGAUCAGAAaGUUcGCGUCGaaggUCGACa -3'
miRNA:   3'- uGCUGGUCUUaCGA-CGCAGCg---AGCUG- -5'
19459 3' -54.8 NC_004685.1 + 33793 0.67 0.751003
Target:  5'- aGCGACCgcaccuucAGggUGCUGCG-CgGCUCccagGGCc -3'
miRNA:   3'- -UGCUGG--------UCuuACGACGCaG-CGAG----CUG- -5'
19459 3' -54.8 NC_004685.1 + 57173 0.67 0.751003
Target:  5'- uACGuCCAGAAUGU--CGUUGC-CGACc -3'
miRNA:   3'- -UGCuGGUCUUACGacGCAGCGaGCUG- -5'
19459 3' -54.8 NC_004685.1 + 67556 0.67 0.740674
Target:  5'- uCGACCAGcucuuUGCgcaGCGccucaCGCUCGGCu -3'
miRNA:   3'- uGCUGGUCuu---ACGa--CGCa----GCGAGCUG- -5'
19459 3' -54.8 NC_004685.1 + 39377 0.67 0.740674
Target:  5'- cGCGACCAacgggcgggccGAAcacgGCgagGCGUUGCcCGACg -3'
miRNA:   3'- -UGCUGGU-----------CUUa---CGa--CGCAGCGaGCUG- -5'
19459 3' -54.8 NC_004685.1 + 14418 0.67 0.730238
Target:  5'- gACGACgGGuuccGCcGCGaagCGCUCGGCa -3'
miRNA:   3'- -UGCUGgUCuua-CGaCGCa--GCGAGCUG- -5'
19459 3' -54.8 NC_004685.1 + 69274 0.67 0.730238
Target:  5'- gGCGACCAuuucggcaacGAAUGCcuUGCG-CGuCUUGGCu -3'
miRNA:   3'- -UGCUGGU----------CUUACG--ACGCaGC-GAGCUG- -5'
19459 3' -54.8 NC_004685.1 + 67093 0.67 0.730238
Target:  5'- -aGACCAccucGAGgcugucGUUGCGaCGCUCGGCg -3'
miRNA:   3'- ugCUGGU----CUUa-----CGACGCaGCGAGCUG- -5'
19459 3' -54.8 NC_004685.1 + 16987 0.67 0.719706
Target:  5'- uCGGCgAGGAUGC-GCGUCGaCUCa-- -3'
miRNA:   3'- uGCUGgUCUUACGaCGCAGC-GAGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.